feat: add python ci

.yamllint

@@ -0,0 +1,15 @@
+---
+extends: default
+
+rules:
+  # Rule to enforce the use of double quotes
+  quoted-strings:
+    quote-type: double
+    required: false
+  # Additional rules can be configured as needed
+  line-length:
+    max: 120
+  indentation:
+    spaces: 2
+  document-start: disable
+...

actions/python/code-quality/format/action.yaml

@@ -0,0 +1,89 @@
+---
+name: Format Code
+description: Checks and ensures the code is formatted according to the defined
+  style guidelines.
+
+inputs:
+  os: 
+    description: The operating system to use
+    default: ubuntu-latest
+    required: false
+  python_version:
+    description: Python version to use
+    default: "3.12"
+    required: false
+  poetry_install_options:
+    description: Options for installing dependencies via poetry
+    required: false
+    default: "--only=code_quality --no-root"
+  poetry_export_options:
+    description: Options for exporting dependencies to check for hash
+      changes for cache invalidation
+    required: false
+    default: "--only=code_quality"
+
+runs:
+  using: composite
+  steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+
+    - name: Set up environment
+      uses: elixir-cloud-aai/actions/python/setup/poetry@main
+      id: setup
+      continue-on-error: true
+      with:
+        os: ${{ inputs.os }}
+        python_version: ${{ inputs.python_version }}
+        poetry_install_options: ${{ inputs.poetry_install_options }}
+        poetry_export_options: ${{ inputs.poetry_export_options }}
+
+    - name: Comment on PR
+      if: steps.setup.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: format
+        step_name: setup
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          Check your `pyproject.toml` and the dependency groups in them,
+          especially the `code_quality` group.
+
+          <details>
+          <summary>Env used for CI</summary>
+            OS: ${{ inputs.os }}
+            Python Version: ${{ inputs.python_version }}
+            Poetry Install Options: ${{ inputs.poetry_install_options }}
+            Poetry Export Options: ${{ inputs.poetry_export_options }}
+          </details>
+
+    - name: Check code style
+      id: format
+      continue-on-error: true
+      shell: bash
+      run: poetry run ruff format --check
+
+    - name: Comment on PR
+      if: steps.format.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: format
+        step_name: format
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          With the environment set up and dependencies installed, 
+          run `poetry run ruff format` to check and fix some code style issues.
+
+          <details>
+          <summary>Use Makefile command</summary>
+            Default makefile from cookiecutter template has a command 
+            `make fl` to run the check.
+
+            Run make in the root directory of the project, to see all the 
+            available commands.
+          </details>
+...

actions/python/code-quality/lint/action.yaml

@@ -0,0 +1,86 @@
+---
+name: Lint Code
+description: Lints the code to ensure code quality and adherence to standards.
+
+inputs:
+  os: 
+    description: The operating system to use
+    default: ubuntu-latest
+    required: false
+  python_version:
+    description: Python version to use
+    default: "3.12"
+    required: false
+  poetry_install_options:
+    description: Options for installing dependencies via poetry
+    required: false
+    default: "--only=code_quality --no-root"
+  poetry_export_options:
+    description: Options for exporting dependencies to check for hash
+      changes for cache invalidation
+    required: false
+    default: "--only=code_quality"
+
+runs:
+  using: composite
+  steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+
+    - name: Set up environment
+      uses: elixir-cloud-aai/actions/python/setup/poetry@main
+      continue-on-error: true
+      with:
+        os: ${{ inputs.os }}
+        python_version: ${{ inputs.python_version }}
+        poetry_install_options: ${{ inputs.poetry_install_options }}
+        poetry_export_options: ${{ inputs.poetry_export_options }}
+
+    - name: Comment on PR
+      if: steps.setup.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: lint
+        step_name: setup
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          Check your `pyproject.toml` and the dependency groups in them.
+
+          <details>
+          <summary>Env used for CI</summary>
+            OS: ${{ inputs.os }}
+            Python Version: ${{ inputs.python_version }}
+            Poetry Install Options: ${{ inputs.poetry_install_options }}
+            Poetry Export Options: ${{ inputs.poetry_export_options }}
+          </details>
+
+    - name: Check code quality
+      shell: bash
+      id: lint
+      run: poetry run ruff check .
+
+    - name: Comment on PR
+      if: steps.lint.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: format
+        step_name: format
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          With the environment set up and dependencies installed, 
+          run `poetry run ruff check --fix` to check and fix some lint 
+          issues.
+
+          <details>
+          <summary>Use Makefile command</summary>
+            Default makefile from cookiecutter template has a command 
+            `make fl` to run the check.
+
+            Run make in the root directory of the project, to see all the 
+            available commands.
+          </details>
+...

actions/python/code-quality/type-check/action.yaml

@@ -0,0 +1,115 @@
+---
+name: Type Check
+description: Runs a type check on the codebase to ensure type safety and
+  correctness.
+
+inputs:
+  os:
+    description: The operating system to use
+    required: false
+    default: "ubuntu-latest"
+  python_version:
+    description: Python version to use
+    default: "3.12"
+    required: false
+  poetry_install_options:
+    description: Options for installing dependencies via poetry
+    required: false
+    default: "--with=code_quality --with=types --no-root"
+  poetry_export_options:
+    description: Options for exporting dependencies to check for hash
+      changes for cache invalidation
+    required: false
+    default: "--with=code_quality --with=types"
+  file_path:
+    description: The path to the file or directory to type check
+    required: false
+    default: "."
+
+
+runs:
+  using: composite
+  steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+
+    - name: Set up environment
+      uses: elixir-cloud-aai/actions/python/setup/poetry@main
+      id: setup
+      continue-on-error: true
+      with:
+        os: ${{ inputs.os }}
+        python_version: ${{ inputs.python_version }}
+        poetry_install_options: ${{ inputs.poetry_install_options }}
+        poetry_export_options: ${{ inputs.poetry_export_options }}
+
+    - name: Comment on PR
+      if: steps.setup.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: type-check
+        step_name: setup
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          Check your `pyproject.toml` and the dependency groups in them,
+          especially `code_quality` and `types` group.
+
+          <details>
+          <summary>Env used for CI</summary>
+            OS: ${{ inputs.os }}
+            Python Version: ${{ inputs.python_version }}
+            Poetry Install Options: ${{ inputs.poetry_install_options }}
+            Poetry Export Options: ${{ inputs.poetry_export_options }}
+          </details>
+
+    - name: Check types
+      id: type-check
+      continue-on-error: true
+      shell: bash
+      run: poetry run mypy ${{ inputs.file_path }}
+
+    - name: Comment on PR
+      if: steps.type-check.outcome == 'failure'
+      uses: elixir-cloud-aai/actions/github/comment@main
+      with:
+        ci_name: type-check
+        step_name: type-check
+        commit_id: ${{ github.sha }}
+        issue-number: ${{ github.event.number }}
+        username: ${{ github.actor}}
+        message: |
+          With the environment set up and dependencies installed, 
+          run `run mypy ${{ inputs.file_path }}` to see mypy errors.
+
+          <details>
+            <summary>Missing stubs or types</summary>
+            If you see errors related to missing stubs or types,
+            try running `poetry add types-<package> --group=types` or
+            `poetry add <package>-stub --group=types` to add type stubs.
+
+            If that fails, either the package does not have types/stubs
+            or they have different name.
+
+            In that case you can seach for them and add them to types group.
+          </details>
+
+          <details>
+            <summary>Ignore error</summary>
+            Add the module name in pyproject.toml under [tools.mypy.overrides]
+            section inside modules list.
+
+            ```toml
+            [[tool.mypy.overrides]]
+            ignore_missing_imports = true
+            module = [
+              "connexion.*",
+            ]
+            ```
+
+            Try to as granular as possible to avoid ignoring all errors. If 
+            you are using `x.y.z` import, add `x.y.z.*` to the list instead 
+            of `x.*`.
+          </details>
+...