add links for database

eipm · Dec 20, 2019 · 8325ebb · 8325ebb
1 parent 20211b4
commit 8325ebb
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -15,9 +15,9 @@ DGVar was developed and tested on linux system. To run DGVar, you'll need a linu
 
 ## Pre-compiled database
 The following databases are required:
-- Human GRCh37 reference genome
-- NCBI dbSNP v137
-- snpEff database GRCh37.75
+- Human GRCh37 reference genome (b37, available on GATK resource [bundle](https://software.broadinstitute.org/gatk/download/bundle))
+- NCBI dbSNP v137 (available on GATK resource [bundle](https://software.broadinstitute.org/gatk/download/bundle))
+- SnpEff database GRCh37.75 (available on [SnpEff](http://snpeff.sourceforge.net/download.html#databases))
 - NCBI ClinVar v20180805 (slim version available on [Box](https://wcm.box.com/s/nzzhudb6371cwuv1w2omtp84ripsfnsr))
 - ExAC v0.3.1 (slim version available on [Box](https://wcm.box.com/s/8t01e5eb3vf3f1idpg7zwq71ypos8qgz))
 - Exome target regions (Agilent HaloPlex bed file available on [Box](https://wcm.box.com/s/4bkw0f2rn858re30hq85lwgxxk33mes3))