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[DRAFT] Pugh lab main [just to compare] #17

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[DRAFT] Pugh lab main [just to compare] #17

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Commits on Oct 18, 2021

  1. fix loading genomic data flag, yml format, and matching clinical vita… 

    …l status
    @mickey-ng
    mickey-ng committed Oct 18, 2021
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Commits on Feb 17, 2022

  1. Add extra fields to match and fields to resulting match document

    @mickey-ng
    mickey-ng committed Feb 17, 2022
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Commits on Mar 11, 2022

  1. Add extra solid tumor mapping, make oncotree diagnosis query case ins… 

    …ensitive
    @mickey-ng
    mickey-ng committed Mar 11, 2022
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Commits on Apr 1, 2022

  1. add mutation effect to match document

    @mickey-ng
    mickey-ng committed Apr 1, 2022
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  2. add molecular function mapping, fix bug with oncotree diagnosis case … 

    …insensitive match
    @mickey-ng
    mickey-ng committed Apr 1, 2022
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Commits on Apr 24, 2023

  1. all true false mapping, and query to get all genomic results

    @mickey-ng
    mickey-ng committed Apr 24, 2023
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  2. fix valid clinical reason subset bug without using pop

    @mickey-ng
    mickey-ng committed Apr 24, 2023
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Commits on Apr 27, 2023

  1. fix case insensitive oncotree diagnosis match with regex to strict match

    @mickey-ng
    mickey-ng committed Apr 27, 2023
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Commits on May 19, 2023

  1. rewrite case insensitive match to use or instead of in to pair with r… 

    …egex
    @mickey-ng
    mickey-ng committed May 19, 2023
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Commits on Jun 1, 2023

  1. make oncotree primary diagnosis query ignore NA in data

    @mickey-ng
    mickey-ng committed Jun 1, 2023
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Commits on Jun 6, 2023

  1. CTM-217 remove unknown from inactivating mapping

    @mickey-ng
    mickey-ng committed Jun 6, 2023
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Commits on Jul 4, 2023

  1. dockerize

    @artonio
    artonio committed Jul 4, 2023
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Commits on Jul 6, 2023

  1. add functions to load trial from var

    @artonio
    artonio committed Jul 6, 2023
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  2. add functions to load clinical and genomic via api

    @artonio
    artonio committed Jul 6, 2023
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Commits on Jul 12, 2023

  1. added map_clinical_to_genomic

    @artonio
    artonio committed Jul 12, 2023
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Commits on Jul 20, 2023

  1. add value match for wildtype when recording result

    @mickey-ng
    mickey-ng committed Jul 20, 2023
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Commits on Jul 21, 2023

  1. Merge pull request #1 from pughlab/genomic_match_all 

    add value match for wildtype when recording result
    @mickey-ng
    mickey-ng authored Jul 21, 2023
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  2. fix to pass study id from clinical to results

    @mickey-ng
    mickey-ng committed Jul 21, 2023
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Commits on Aug 2, 2023

  1. CTM-289: fix structural variation matching without report date

    @mickey-ng
    mickey-ng committed Aug 2, 2023
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Commits on Aug 3, 2023

  1. Merge pull request #2 from pughlab/genomic_match_all 

    CTM-289: fix structural variation matching without report date
    @artonio
    artonio authored Aug 3, 2023
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Commits on Aug 4, 2023

  1. CTM-293 add short title to result db

    @mickey-ng
    mickey-ng committed Aug 4, 2023
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Commits on Aug 16, 2023

  1. CTM-303 update oncotree definition

    @mickey-ng
    mickey-ng committed Aug 16, 2023
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Commits on Aug 23, 2023

  1. test submodule commit

    @mickey-ng
    mickey-ng committed Aug 23, 2023
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Commits on Aug 30, 2023

  1. test upload

    @mickey-ng
    mickey-ng committed Aug 30, 2023
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Commits on Sep 5, 2023

  1. CTM-284 age expression query

    @mickey-ng
    mickey-ng committed Sep 5, 2023
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  2. test update

    @mickey-ng
    mickey-ng committed Sep 5, 2023
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  3. fix age expression to use correct field in clinical data

    @mickey-ng
    mickey-ng committed Sep 5, 2023
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  4. fix age loading as string instead of int

    @mickey-ng
    mickey-ng committed Sep 5, 2023
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  5. fix age matching query transform

    @mickey-ng
    mickey-ng committed Sep 5, 2023
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