update poster

cpp-lln-lab · Jun 30, 2023 · 831c4c7 · 831c4c7
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diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,7 @@
+folders
+
 poster_ohbm_2023_bidspm.pdf
 
 poster/betterposter-template*
 
-# General
 .DS_Store
diff --git a/README.md b/README.md
@@ -1,3 +1,5 @@
+
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8099835.svg)](https://doi.org/10.5281/zenodo.8099835)
 [![License: CC BY 3.0](https://img.shields.io/badge/License-CC_BY_3.0-lightgrey.svg)](https://creativecommons.org/licenses/by/3.0/)
 
-# Poster for bidspm for OHBM 2023
+# Poster for bidspm for OHBM 2023
diff --git a/poster/docker.sh b/poster/docker.sh
@@ -0,0 +1,12 @@
+docker run -it --rm \
+    -v $sourcedata:/sourcedata \
+    -v $derivatives:/derivatives \
+    -v $model_dir:/models \
+        cpplab/bidspm:latest \
+            /sourcedata/raw \
+            /derivatives \
+            subject \
+            --action stats \
+            --preproc_dir /derivatives/bidspm-preproc \
+            --model_file /models/smdl.json \
+            --fwhm 6
diff --git a/poster/icons/iconmonstr-checkbox-19.svg b/poster/icons/iconmonstr-checkbox-19.svg
diff --git a/poster/icons/iconmonstr-folder-thin.svg b/poster/icons/iconmonstr-folder-thin.svg
diff --git a/poster/images/qr-code.png b/poster/images/qr-code.png
diff --git a/poster/inputs.txt b/poster/inputs.txt
@@ -0,0 +1,7 @@
+├── sourcedata
+│   ├── fmriprep
+│   └── raw
+├── derivatives
+│   └── bidspm-preproc
+└── models
+    └── smdl.json
diff --git a/poster/matlab.m b/poster/matlab.m
@@ -0,0 +1,20 @@
+%% smooth
+bidspm(fmriprep_dir, ...
+       derivatives, ...
+       'subject', ...
+       'action', 'smooth', ...
+       'task', {'Motion'}, 'space', ...
+       {'MNI152NLin6Asym'}, 'fwhm', 6);
+
+%% stat
+bidspm(bids_dir, derivatives, 'subject',
+       'action', 'stats', ...
+       'preproc_dir', preproc_dir,
+       'model_file', model_file, ...
+       'fwhm', 6);
+
+bidspm(bids_dir, derivatives, 'dataset',
+       'action', 'stats', ...
+       'preproc_dir', preproc_dir,
+       'model_file', model_file, ...
+       'fwhm', 6);
diff --git a/poster/output.txt b/poster/output.txt
@@ -1,4 +1,3 @@
-.
 ├── sub-01
 │   └── task-Motion_space-MNI152NLin6Asym_FWHM-6
 │       ├── SPM.mat

diff --git a/poster/poster_ohbm_2023_bidspm.svg b/poster/poster_ohbm_2023_bidspm.svg
diff --git a/poster/step_2_stats.m b/poster/step_2_stats.m
diff --git a/poster/zenodo.7439035.svg → poster/zenodo.8099835.svg b/poster/zenodo.7439035.svg → poster/zenodo.8099835.svg