Releases: cov-lineages/pangolin-assignment
pangolin-assignment v1.15.1
Assignment cache from pango-designation v1.15.1 on GISAID sequences downloaded through 2022-10-03
The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.15.1 lineageTree.pb> file prior to v1.15.1 release
pangolin: 4.1.2
usher 0.5.6
gofasta 1.1.0
minimap2 2.24-r1122
faToVcf: 426
pangolin-assignment v1.14
Assignment cache from pango-designation v1.14 on GISAID sequences downloaded through 2022-08-21
The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.14 lineageTree.pb> file prior to v1.14 release
pangolin: 4.1.2
usher 0.5.4
gofasta 1.0.0
minimap2 2.24-r1122
faToVcf: 426
pangolin-assignment v1.13
Assignment cache from pango-designation v1.13 on GISAID sequences downloaded through 2022-08-01
The cache was computed at UCSC on sequences downloaded from GISAID, using pangolin with the --skip-scorpio flag and --usher-tree <v1.13 lineageTree.pb> file prior to v1.13 release
pangolin: 4.1.2
usher 0.5.4
gofasta 1.0.0
minimap2 2.24-r1122
faToVcf: 426
pangolin-assignment v1.12
Assignment cache from pango-designation v1.12 on GISAID sequences downloaded through 2022-07-11
The cache was computed at UCSC on sequences downloaded from GISAID using the following software versions:
pangolin: 4.1.1 (with --skip-scorpio flag and --usher-tree <v1.12 lineageTree.pb> file prior to v1.12 release)
usher: v0.5.4
faToVcf: bioconda 426
gofasta: bioconda 1.0.0
minimap2: bioconda 2.24 (--version --> 2.24-r1122)
pangolin-assignment v1.11
Assignment cache from pango-designation v1.11 on GISAID sequences downloaded through 2022-06-22
The cache was computed at UCSC on sequences downloaded from GISAID using the following software versions:
pangolin: 4.0.6 (with --skip-scorpio flag and --usher-tree <v1.11 lineageTree.pb> file prior to v1.11 release)
usher: v0.5.4
faToVcf: bioconda 426
gofasta: bioconda 1.0.0
minimap2: bioconda 2.24 (--version --> 2.24-r1122)
pangolin-assignment v1.9
Assignment cache corresponding to pango-designation release v1.9. This repository is compatible with pangolin v4.0 onwards.
The cache was computed at UCSC on sequences downloaded from GISAID using the following software versions:
pangolin: 4.0.6 (with --skip-scorpio flag and --usher-tree <v1.9 lineageTree.pb> file prior to v1.9 release)
usher: v0.5.4
faToVcf: bioconda 426
gofasta: bioconda 1.0.0
minimap: bioconda 2.24 (--version --> 2.24-r1122)
pangolin-assignment v1.8
Assignment cache corresponding to pango-designation release v1.8. This repository is compatible with pangolin v4.0 onwards.
The cache was computed at UCSC on sequences downloaded from GISAID using the following software versions:
pangolin: 4.0.6 (with --skip-scorpio flag and --usher-tree <v1.8 lineageTree.pb> file prior to v1.8 release)
usher: v0.5.3 patched with yatisht/usher#234 (subsequently available in usher v0.5.4)
faToVcf: bioconda 426
gofasta: bioconda 1.0.0
minimap: bioconda 2.24 (--version --> 2.24-r1122)
pangolin-assignment v1.6
Assignment cache corresponding to pango-designation release v1.6. This repository is compatible with pangolin v4.0 onwards.
pangolin-assignment v1.3
Assignment cache corresponding to pango-designation release v1.3. This repository is compatible with pangolin v4.0 onwards.
pangolin-assignment v1.2.133
Assignment cache from pango-designation v1.2.133 on GISAID sequences downloaded through 2022-03-30