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cEvo Public Resources

Public resources for our projects.

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  1. Quantification-of-the-spread-of-a-SARS-CoV-2-variant Quantification-of-the-spread-of-a-SARS-CoV-2-variant Public

    Python 10

  2. TreePrior-ClockRate TreePrior-ClockRate Public

    Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

    R 2 3

  3. TreePar-MatlabPlugin TreePar-MatlabPlugin Public

    Matlab plugin for TreePar to calculate likelihood for age dependent extinction rates

    M 1

  4. 2015-CeskyKrumlov-Phylodynamics 2015-CeskyKrumlov-Phylodynamics Public

    Český Krumlov 2015 - Phylodynamics

    R 1 2

  5. POUMM-GWAS POUMM-GWAS Public

    Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

    TeX 1

  6. Ebola-CurrentsOutbreaks2014 Ebola-CurrentsOutbreaks2014 Public

    Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.

    R

Repositories

Showing 10 of 10 repositories
  • Quantification-of-the-spread-of-a-SARS-CoV-2-variant Public
    cevo-public/Quantification-of-the-spread-of-a-SARS-CoV-2-variant’s past year of commit activity
    Python 10 GPL-3.0 0 0 0 Updated May 28, 2023
  • harvester-database-and-automation Public

    The database and automation infrastructure used in the Swiss SARS-CoV-2 Sequencing Consortium (S3C)

    cevo-public/harvester-database-and-automation’s past year of commit activity
    Java 0 LGPL-3.0 0 0 0 Updated May 16, 2023
  • Grapevine-SARS-CoV-2-Introduction-Analysis Public

    Pipeline for estimating putatively independent introductions of SARS-CoV-2 from genome sequences.

    cevo-public/Grapevine-SARS-CoV-2-Introduction-Analysis’s past year of commit activity
    R 0 0 0 0 Updated Oct 27, 2022
  • POUMM-GWAS Public

    Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".

    cevo-public/POUMM-GWAS’s past year of commit activity
    TeX 1 0 0 0 Updated Jul 21, 2022
  • 2018-StadlerEtAl-LineageTrees-CodeData Public
    cevo-public/2018-StadlerEtAl-LineageTrees-CodeData’s past year of commit activity
    0 0 0 0 Updated Jul 14, 2020
  • TreePrior-ClockRate Public

    Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)

    cevo-public/TreePrior-ClockRate’s past year of commit activity
    R 2 3 0 0 Updated Mar 18, 2018
  • 2015-GEMP-Phylodynamics Public

    Inferring epidemiological parameters from phylogenies with BEAST2

    cevo-public/2015-GEMP-Phylodynamics’s past year of commit activity
    0 1 0 0 Updated Sep 3, 2015
  • Ebola-CurrentsOutbreaks2014 Public

    Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Outbreaks in September 2014.

    cevo-public/Ebola-CurrentsOutbreaks2014’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 26, 2015
  • 2015-CeskyKrumlov-Phylodynamics Public

    Český Krumlov 2015 - Phylodynamics

    cevo-public/2015-CeskyKrumlov-Phylodynamics’s past year of commit activity
    R 1 2 0 0 Updated Feb 5, 2015
  • TreePar-MatlabPlugin Public

    Matlab plugin for TreePar to calculate likelihood for age dependent extinction rates

    cevo-public/TreePar-MatlabPlugin’s past year of commit activity
    M 1 GPL-2.0 0 0 0 Updated Nov 9, 2014

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