Skip to content

Commit

Permalink
typo
Browse files Browse the repository at this point in the history
  • Loading branch information
colinvwood authored Sep 24, 2024
1 parent 44e09e9 commit 5db933f
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion tutorial/tutorial.md
Original file line number Diff line number Diff line change
Expand Up @@ -186,7 +186,7 @@ qiime qsip2 subset-and-filter \
```

There are four prevalence filters we can apply to the feature table.
Two of these, `--p-min-labeled-sources` and `--p-min-labeled-sources` filter features based on their prevalence across the retained sources.
Two of these, `--p-min-unlabeled-sources` and `--p-min-labeled-sources` filter features based on their prevalence across the retained sources.
The interpretation of the values provided in the above command is that if a feature is present in less than 6 unlabeled sources or less than 3 labeled sources, then it will be filtered.
Because we decided to retain 6 and 3 unlabeled and labeled sources respectively, we are requiring retained features to present in *all* samples.
The other two prevalence filters, `--p-min-unlabeled-fractions` and `--p-min-labeled-fractions` filter features based on fraction (sample) prevalence.
Expand Down

0 comments on commit 5db933f

Please sign in to comment.