First pre-release
Release: v1.0.0
This is the first release of the PheKnowLator project. Additional information can be found here.
Data Sources
Ontologies
Classes
- Human Disease Ontology
- Gene Ontology: gene associations
- Reactome: gene associations
- Human Phenotype Ontology: all source annotations - genes to phenotypes
- Human Phenotype Ontology: all source annotations - diseases to genes to phenotypes
Instances
- CTD: chemicals-genes
- CTD: chemicals-pathways
- CTD: chemicals-diseases
- CTD: genes-pathways
- CTD: diseases-pathways
- STRING DB: Proteins
- String DB: entrez gene mappings
Knowledge Representation
Results
- Deductively closed knowledge graph - a text file that contains all of the knowledge graph edges, labeled.
- Labeled embeddings - a text file containing an embedding for each node in the knowledge graph.