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Continuous development infrastructure for python #353

Closed
wants to merge 22 commits into from
Closed

Continuous development infrastructure for python #353

wants to merge 22 commits into from

Commits on Jun 29, 2022

  1. Improve README.md 

    Change README.md to reflect wider capabilities (C++ library, Python,
WebAssembly). Move a bulk of WebAssembly specific intructions to
`wasm/README.md`.
    @jerinphilip
    jerinphilip committed Jun 29, 2022
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Commits on Jul 8, 2022

  1. Pass on arg

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  2. Basic pytest wiring

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    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  3. Export alignments from python

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  4. print alignments for now

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  5. Apply formatting

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  6. Include python bytecodes to gitignore

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  7. Fix typecheck error

    @jerinphilip
    Jerin Philip authored and jerinphilip committed Jul 8, 2022
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  8. Move tests into a test-folder 

    Following
https://docs.pytest.org/en/6.2.x/goodpractices.html#tests-outside-application-code
    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  9. Include tests within setup.py

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  10. Apply formatting

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    jerinphilip committed Jul 8, 2022
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  11. No coverage for repository, remove main from test_all

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  12. Add a coverage script

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  13. Consolidate python runs into a bash script, use it at github workflow

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  14. Apply formatting: black + isort

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    jerinphilip committed Jul 8, 2022
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  15. Add a toJSON method, just to try accessing alignments

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    jerinphilip committed Jul 8, 2022
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  16. Let's add the notebook and see if we can fit this somewhere

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  17. Apply black + isort

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  18. Import from python wrapped bergamot to avoid pytype errors

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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  19. expand el -> element shorthand

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    jerinphilip committed Jul 8, 2022
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  20. Apply black formatting again

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    jerinphilip committed Jul 8, 2022
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  21. Turn off qualityscores by default

    @jerinphilip
    jerinphilip committed Jul 8, 2022
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