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idba: Bump revision for gcc@9 #1305

Merged
merged 1 commit into from
Mar 11, 2021
Merged

idba: Bump revision for gcc@9 #1305

merged 1 commit into from
Mar 11, 2021

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sjackman
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Fix the error:

Broken dependencies:
  /usr/local/opt/gcc/lib/gcc/9/libgomp.1.dylib (gcc)
  /usr/local/opt/gcc/lib/gcc/9/libstdc++.6.dylib (gcc)
Warning: idba has broken dynamic library links
  • Have you followed the guidelines for contributing?
  • Have you checked that there aren't other open pull requests for the same formula update/change?
  • Have you built your formula locally with brew install --build-from-source FORMULA, where FORMULA is the name of the formula you're submitting?
  • Does your build pass brew audit --strict FORMULA (after doing brew install FORMULA)?

Fixes #1303

@sjackman
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@lmrodriguezr The CI build on Linux had an unrelated issue with maxbin2. That'll delay merging this PR. The bottle for macOS was successfully built though, which you can download and install by clicking Checks then Artifacts then bottles which will download bottles.zip: https://github.com/brewsci/homebrew-bio/suites/2229017731/artifacts/46193039

@sjackman
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==> Testing brewsci/bio/maxbin2
==> perl /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl 2>&1
Can't locate LWP/Simple.pm in @INC (you may need to install the LWP::Simple module) (@INC contains: /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/site_perl/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/site_perl/5.32.1 /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/5.32.1 /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.32.1) at /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl line 4.
BEGIN failed--compilation aborted at /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl line 4.
==> Testing brewsci/bio/maxbin2 (again)
/usr/bin/curl --disable --globoff --show-error --user-agent Linuxbrew/3.0.5-12-g94431ce\ \(Linux\;\ x86_64\ Ubuntu\ 16.04.7\ LTS\)\ curl/7.47.0 --header Accept-Language:\ en --retry 3 --location --silent --head --request GET https://downloads.sourceforge.net/project/maxbin2/MaxBin-2.2.7.tar.gz
==> perl /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl 2>&1
Can't locate LWP/Simple.pm in @INC (you may need to install the LWP::Simple module) (@INC contains: /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/site_perl/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/site_perl/5.32.1 /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/Cellar/perl/5.32.1_1/lib/perl5/5.32.1 /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.32.1/x86_64-linux-thread-multi /home/linuxbrew/.linuxbrew/lib/perl5/site_perl/5.32.1) at /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl line 4.
BEGIN failed--compilation aborted at /home/linuxbrew/.linuxbrew/Cellar/maxbin2/2.2.7/libexec/run_MaxBin.pl line 4.
Error: brewsci/bio/maxbin2: failed
An exception occurred within a child process:
  Minitest::Assertion: Expected: 0
  Actual: 2

https://github.com/brewsci/homebrew-bio/pull/1305/checks?check_run_id=2081090629#step:5:116

Fix the error:
Broken dependencies:
  /usr/local/opt/gcc/lib/gcc/9/libgomp.1.dylib (gcc)
  /usr/local/opt/gcc/lib/gcc/9/libstdc++.6.dylib (gcc)
Warning: idba has broken dynamic library links
@sjackman sjackman merged commit 2d73f66 into brewsci:develop Mar 11, 2021
@sjackman sjackman deleted the sj/idba branch March 11, 2021 01:02
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idba segmentation fault
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