update script

scripts/update_environment.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+if [ $# -lt 1 ]; then
+    echo "please specify the environments (i.e., 'wp3', 'wp4', and/or 'wp5')"
+    exit 1
+fi
+
+create_environment ()(
+    URL1="https://raw.githubusercontent.com/bopen/c3s-eqc-toolbox-template/main/environment.yml"
+    URL2="https://raw.githubusercontent.com/bopen/c3s-eqc-toolbox-template/main/environments/environment_$1.yml"
+    DATE=$(date --iso-8601=seconds)
+    TMP1=$(mktemp --suffix=.yml)
+    TMP2=$(mktemp --suffix=.yml)
+    TMP_MERGED=$(mktemp --suffix=.yml)
+    wget -O "$TMP1" "$URL1"
+    wget -O "$TMP2" "$URL2"
+    conda run conda-merge "$TMP1" "$TMP2" > "$TMP_MERGED"
+    mamba env create -n "$1" -f "$TMP_MERGED" --yes || exit
+    # mamba env update -n "$1" -f "$TMP_MERGED" --prune || exit
+    mkdir -p yml_files
+    conda env export -n "$1" --file yml_files/environment_"$1"_"$DATE".yml --no-build
+    rm -f "$TMP1" "$TMP2" "$TMP_MERGED"
+)
+
+mamba update -n base conda mamba --yes
+mamba install -c conda-forge conda-merge --yes
+for WP in "$@"; do
+    create_environment "$WP" || exit
+done
+conda clean --all --yes