Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Improve error logging during new project initiation #940

Merged
merged 2 commits into from
Oct 7, 2024
Merged

Improve error logging during new project initiation #940

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
ae9b734
Improve error logging during new project initiation
bkieft-usa Oct 7, 2024
7d72e5e
Merge branch 'main' into untargeted_dev
bkieft-usa Oct 7, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions metatlas/untargeted/tools.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1568,11 +1568,11 @@ def write_metadata_per_new_project(df: pd.DataFrame,background_designator=[],raw
if department =='eb':
department = 'egsb'
if not department in ['jgi','egsb']:
logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(project_name), 2))
logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(parent_dir), 2))
continue
raw_data_subdir = department
except:
logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(project_name), 2))
logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(parent_dir), 2))
continue
full_mzml_path = os.path.join(raw_data_dir,raw_data_subdir,parent_dir)

Expand Down
Loading