Merge pull request #865 from biorack/update_msms_frag_cutoff

Modify hard-coded parameter min_mz in targeted_output.py
biorack · May 13, 2024 · f169765 · f169765
2 parents 8870b23 + eb29ac7
commit f169765
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/metatlas/io/targeted_output.py b/metatlas/io/targeted_output.py
@@ -218,7 +218,7 @@ def write_metrics_and_boxplots(metatlas_dataset, analysis_parameters, overwrite=
 
 
 def write_msms_fragment_ions(
-    data, intensity_fraction=0.01, min_mz=450, max_mz_offset=5, scale_intensity=1e5, overwrite=False
+    data, intensity_fraction=0.01, min_mz=0, max_mz_offset=5, scale_intensity=1e5, overwrite=False
 ):
     """
     inputs: