Merge pull request #940 from biorack/untargeted_dev

Improve error logging during new project initiation
biorack · Oct 7, 2024 · 5ad3f20 · 5ad3f20
2 parents 5b4eabb + 7d72e5e
commit 5ad3f20
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/metatlas/untargeted/tools.py b/metatlas/untargeted/tools.py
@@ -1568,11 +1568,11 @@ def write_metadata_per_new_project(df: pd.DataFrame,background_designator=[],raw
                 if department =='eb':
                     department = 'egsb'
                 if not department in ['jgi','egsb']:
-                    logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(project_name), 2))
+                    logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(parent_dir), 2))
                     continue
                 raw_data_subdir = department
             except:
-                logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(project_name), 2))
+                logging.warning(tab_print("Warning! %s does not have a valid department name in the second field. Use --raw_data_subdir to provide a custom subdirectory for the raw data."%(parent_dir), 2))
                 continue
         full_mzml_path = os.path.join(raw_data_dir,raw_data_subdir,parent_dir)