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cd.yaml
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Remove outdated argument checker to allow for skipping steps cd #572: Pull request #962 closed by bkieft-usa
October 15, 2024 23:09 1m 51s untargeted_dev
untargeted_dev
October 15, 2024 23:09 1m 51s
Move gnps2 creds to shared location for the metatlas group to access cd #571: Pull request #961 closed by bkieft-usa
October 15, 2024 18:39 2m 21s untargeted_dev
untargeted_dev
October 15, 2024 18:39 2m 21s
feat: walk local directory during raw data mirror to find correct files cd #570: Pull request #960 closed by bkieft-usa
October 15, 2024 16:51 2m 0s untargeted_dev
untargeted_dev
October 15, 2024 16:51 2m 0s
Force search of other raw data dirs when project name is non conforming cd #569: Pull request #959 closed by bkieft-usa
October 15, 2024 16:26 3m 8s untargeted_dev
untargeted_dev
October 15, 2024 16:26 3m 8s
feat: divert log to standard output for debugging cd #568: Pull request #958 closed by bkieft-usa
October 14, 2024 21:33 1m 29s untargeted_dev
untargeted_dev
October 14, 2024 21:33 1m 29s
feat: ability to define the location of raw data on disk or have the untargeted pipeline infer it cd #567: Pull request #957 closed by bkieft-usa
October 11, 2024 22:12 2m 22s untargeted_dev
untargeted_dev
October 11, 2024 22:12 2m 22s
feat: calcuate RT quality differently between C18 and HILIC cd #566: Pull request #956 closed by bkieft-usa
October 11, 2024 22:09 2m 2s compound_id_sheet_dev
compound_id_sheet_dev
October 11, 2024 22:09 2m 2s
cd cd #565: Manually run by bkieft-usa
October 11, 2024 21:08 8m 25s compound_id_sheet_dev
compound_id_sheet_dev
October 11, 2024 21:08 8m 25s
Allow for sync from LIMS to NERSC to occur even when --direct_input is supplied cd #564: Pull request #955 closed by bkieft-usa
October 10, 2024 22:43 1m 33s untargeted_dev
untargeted_dev
October 10, 2024 22:43 1m 33s
Skip result file renaming inside results zip (readability reaname) if the project name doesn't conform cd #563: Pull request #954 closed by bkieft-usa
October 10, 2024 22:22 2m 13s untargeted_dev
untargeted_dev
October 10, 2024 22:22 2m 13s
Fix default behavior of flags passed to untargeted pipeline cd #562: Pull request #953 closed by bkieft-usa
October 10, 2024 21:02 1m 32s untargeted_dev
untargeted_dev
October 10, 2024 21:02 1m 32s
Allow GNPS2 mirror to be parameterized and passed as command line argument cd #561: Pull request #952 closed by bkieft-usa
October 10, 2024 19:51 2m 26s untargeted_dev
untargeted_dev
October 10, 2024 19:51 2m 26s
Untargeted dev cd #560: Pull request #951 closed by bkieft-usa
October 10, 2024 19:39 1m 57s untargeted_dev
untargeted_dev
October 10, 2024 19:39 1m 57s
Update Optional typing hints to force and error if params are missing cd #559: Pull request #950 closed by bkieft-usa
October 10, 2024 19:03 3m 55s untargeted_dev
untargeted_dev
October 10, 2024 19:03 3m 55s
Change float to int to update LIMS table cd #558: Pull request #949 closed by bkieft-usa
October 10, 2024 18:20 1m 40s untargeted_dev
untargeted_dev
October 10, 2024 18:20 1m 40s
Untargeted dev cd #557: Pull request #948 closed by bkieft-usa
October 10, 2024 18:10 2m 45s untargeted_dev
untargeted_dev
October 10, 2024 18:10 2m 45s
Use specific except catch with IndexError when going through old mzML file names cd #556: Pull request #947 closed by bkieft-usa
October 10, 2024 16:48 1m 40s untargeted_dev
untargeted_dev
October 10, 2024 16:48 1m 40s
Relax project and file name validation in untargeted for large rerun cd #555: Pull request #946 closed by bkieft-usa
October 10, 2024 16:06 2m 48s untargeted_dev
untargeted_dev
October 10, 2024 16:06 2m 48s
Create subdir for polarities in raw data at GNPS2 cd #554: Pull request #945 closed by bkieft-usa
October 9, 2024 23:52 1m 54s untargeted_dev
untargeted_dev
October 9, 2024 23:52 1m 54s
Update python env for untargeted email reports cd #553: Pull request #944 closed by bkieft-usa
October 8, 2024 17:18 2m 32s untargeted_dev
untargeted_dev
October 8, 2024 17:18 2m 32s
Fix parent dir skipping (edge cases) for older projects cd #552: Pull request #943 closed by bkieft-usa
October 8, 2024 16:58 1m 56s untargeted_dev
untargeted_dev
October 8, 2024 16:58 1m 56s
Remove processing of test directories that have made their way into LIMS cd #551: Pull request #942 closed by bkieft-usa
October 8, 2024 16:44 2m 52s untargeted_dev
untargeted_dev
October 8, 2024 16:44 2m 52s
Improve error logging during new project initiation cd #550: Pull request #940 closed by bkieft-usa
October 7, 2024 18:32 1m 35s untargeted_dev
untargeted_dev
October 7, 2024 18:32 1m 35s
Remove polarity string from rename function cd #549: Pull request #939 closed by bkieft-usa
October 4, 2024 18:02 3m 32s untargeted_dev
untargeted_dev
October 4, 2024 18:02 3m 32s
Fix file rename before zip cd #548: Pull request #938 closed by bkieft-usa
October 4, 2024 17:50 1m 35s untargeted_dev
untargeted_dev
October 4, 2024 17:50 1m 35s