Update update_lcmsfiles_in_lims.py #593
Workflow file for this run
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name: ci | |
on: | |
pull_request: | |
branches: | |
- main | |
jobs: | |
unit_tests: | |
name: Run unit tests suite | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Cache nox environment for unit tests | |
uses: actions/cache@v3 | |
with: | |
path: ~/work/metatlas/metatlas/.nox | |
key: ${{ runner.os }}-nox | |
- name: Setup nox | |
uses: daisylb/setup-nox@c375841575e07f30359a5843bf0bffa7aa596782 | |
- name: Run unit tests | |
run: nox -s unit_tests-3.8 | |
system_test1: | |
name: Run system test 1 - HILIC targeted | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Run system tests | |
run: | | |
pip install nox | |
cd /src/ | |
nox -s system_tests-3.8 -- -k test_targeted | |
system_test2: | |
name: Run system test 2 - RT alignment | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Run system tests | |
run: | | |
pip install nox | |
cd /src/ | |
nox -s system_tests-3.8 -- -k test_rt_alignment | |
system_test3: | |
name: Run system test 3 - add MSMS references | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Run system tests | |
run: | | |
pip install nox | |
cd /src/ | |
nox -s system_tests-3.8 -- -k test_add_msms_ref | |
system_test4: | |
name: Run system test 4 - C18 targeted | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Run system tests | |
run: | | |
pip install nox | |
cd /src/ | |
nox -s system_tests-3.8 -- -k test_c18 | |
system_test5: | |
name: Run system test 5 - HILIC Targeted_hybrid | |
runs-on: ubuntu-20.04 | |
continue-on-error: true | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Run system tests | |
run: | | |
pip install nox | |
cd /src/ | |
nox -s system_tests-3.8 -- -k test_hybrid |