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updates for Cori to Perlmutter transition #586

updates for Cori to Perlmutter transition

updates for Cori to Perlmutter transition #586

Workflow file for this run

name: ci
on:
pull_request:
branches:
- main
jobs:
unit_tests:
name: Run unit tests suite
runs-on: ubuntu-20.04
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Cache nox environment for unit tests
uses: actions/cache@v2
with:
path: ~/work/metatlas/metatlas/.nox
key: ${{ runner.os }}-nox
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run unit tests
run: nox -s unit_tests-3.8
system_test1:
name: Run system test 1 - HILIC targeted
runs-on: ubuntu-20.04
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run system tests
run: nox -s system_tests-3.8 -- -k test_targeted
system_test2:
name: Run system test 2 - RT alignment
runs-on: ubuntu-20.04
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run system tests
run: nox -s system_tests-3.8 -- -k test_rt_alignment
system_test3:
name: Run system test 3 - add MSMS references
runs-on: ubuntu-20.04
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run system tests
run: nox -s system_tests-3.8 -- -k test_add_msms_ref
system_test4:
name: Run system test 4 - C18 targeted
runs-on: ubuntu-20.04
steps:
- name: Checkout source
uses: actions/checkout@v2
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run system tests
run: nox -s system_tests-3.8 -- -k test_c18
system_test5:
name: Run system test 5 - HILIC Targeted_hybrid
runs-on: ubuntu-20.04
continue-on-error: true
steps:
- name: Checkout source
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Setup nox
uses: excitedleigh/setup-nox@4c62aee44396909396d10137c747b2633deeee76
- name: Run system tests
run: nox -s system_tests-3.8 -- -k test_hybrid