Update README.md

README.md

@@ -32,16 +32,17 @@
 `biolexica` helps generate and apply coherent biomedical lexica. It takes care of the following:
 
 1. Getting names and synonyms from a diverse set of inputs (ontologies, databases, custom)
-   using `pyobo`, `bioontologies`, `biosynonyms`, and more.
+   using [`pyobo`](https://github.com/pyobo/pyobo), [`bioontologies`](https://github.com/biopragmatics/bioontologies), 
+   [`biosynonyms`](https://github.com/biopragmatics/biosynonyms), and more.
 2. Merging equivalent terms to best take advantage of different synonyms for the same term from different sources
-   using `semra`.
-3. Generating lexical index and doing NER using `gilda`
+   using [`semra`](https://github.com/biopragmatics/semra).
+3. Generating lexical index and doing NER using [Gilda](https://github.com/gyorilab/gilda)
 
 Importantly, we pre-define lexica for several entity types that can be readily used with Gilda in
 the [`lexica/`](lexica/) folder including:
 
-1. Cells and cell lines
-2. Diseased, conditions, and other phenotypes
+1. [Cells and cell lines](lexica/cell)
+2. [Diseased, conditions, and other phenotypes](lexica/phenotype)
 
 ## 🚀 Installation
 
@@ -78,15 +79,6 @@ The code in this package is licensed under the MIT License.
 Citation goes here!
 -->
 
-<!--
-### 🎁 Support
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-This project has been supported by the following organizations (in alphabetical order):
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-- [Harvard Program in Therapeutic Science - Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/)
-
--->
-
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 ### 💰 Funding