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biopragmatics · Jan 31, 2024 · 87fc576 · 87fc576
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Showing 3 changed files with 9 additions and 4 deletions.
diff --git a/lexica/cell/generate.py b/lexica/cell/generate.py
@@ -12,7 +12,7 @@
     biolexica.Input(source="mesh", processor="pyobo", ancestors=["mesh:D002477"]),  # cells
     biolexica.Input(source="efo", processor="pyobo", ancestors=["efo:0000324"]),
     biolexica.Input(source="cellosaurus", processor="pyobo"),
-    # Input(source="ccle", processor="pyobo"),
+    # biolexica.Input(source="ccle", processor="pyobo"),
     biolexica.Input(source="bto", processor="pyobo"),
     biolexica.Input(source="cl", processor="pyobo"),
     biolexica.Input(source="clo", processor="pyobo"),

diff --git a/setup.cfg b/setup.cfg
@@ -80,13 +80,12 @@ docs =
     sphinx-rtd-theme
     sphinx-click
     sphinx_automodapi
-
+    autodoc_pydantic
 
 [options.entry_points]
 console_scripts =
     biolexica = biolexica.cli:main
 
-
 ######################
 # Doc8 Configuration #
 # (doc8.ini)         #
@@ -127,6 +126,12 @@ exclude_lines =
 docstring_style = sphinx
 strictness = short
 
+#######################
+# MyPy Configuration  #
+#######################
+[mypy]
+plugins = pydantic.mypy
+
 #########################
 # Flake8 Configuration  #
 # (.flake8)             #

diff --git a/src/biolexica/web.py b/src/biolexica/web.py
@@ -1,7 +1,7 @@
 """A FastAPI wrapper for Gilda."""
 
 import pathlib
-from typing import Union, List
+from typing import List, Union
 
 import fastapi
 import gilda