Update OBO lexical matching example

Closes #15
biopragmatics · Mar 12, 2024 · 7988416 · 7988416
1 parent edf0859
commit 7988416
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/lexica/obo/README.md b/lexica/obo/README.md
@@ -29,14 +29,16 @@ safe = []
 print("## Lexical matching returned results\n")
 for graph in data['graphs']:
     for node in sorted(graph['nodes'], key=lambda n: n['id']):
-        if node['type'] == "PROPERTY":
-            continue
         uri = node['id']
         if not uri.startswith(obo_uri_prefix):
             continue
 
+        # Skip nodes without a label
+        name = node.get('lbl')
+        if not name:
+            continue
+
         identifier = uri[len(obo_uri_prefix) :]
-        name = node['lbl']
 
         results = []
         results.extend(grounder.ground(name))