add online version

[ci skip] This build is based on 68e8a49. This commit was created by the following CI build and job: https://github.com/biocypher/biocypher-paper/commit/68e8a49dba1dbde91963df97d920013a9d35befa/checks https://github.com/biocypher/biocypher-paper/actions/runs/8145681774
biocypher · Mar 4, 2024 · 41ea496 · 41ea496
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diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 # Output directory containing the formatted manuscript
 
 The [`gh-pages`](https://github.com/biocypher/biocypher-paper/tree/gh-pages) branch hosts the contents of this directory at <https://biocypher.github.io/biocypher-paper/>.
-The permalink for this webpage version is <https://biocypher.github.io/biocypher-paper/v/184a3416c62e143e90b6524a436121e1f68f4d26/>.
+The permalink for this webpage version is <https://biocypher.github.io/biocypher-paper/v/68e8a49dba1dbde91963df97d920013a9d35befa/>.
 To redirect to the permalink for the latest manuscript version at anytime, use the link <https://biocypher.github.io/biocypher-paper/v/freeze/>.
 
 ## Files
@@ -35,4 +35,4 @@ Verifying timestamps with the `ots verify` command requires running a local bitc
 ## Source
 
 The manuscripts in this directory were built from
-[`184a3416c62e143e90b6524a436121e1f68f4d26`](https://github.com/biocypher/biocypher-paper/commit/184a3416c62e143e90b6524a436121e1f68f4d26).
+[`68e8a49dba1dbde91963df97d920013a9d35befa`](https://github.com/biocypher/biocypher-paper/commit/68e8a49dba1dbde91963df97d920013a9d35befa).
diff --git a/index.html b/index.html
@@ -36,7 +36,7 @@
   <meta name="author" content="Dagmar Waltemath" />
   <meta name="author" content="Judith A. H. Wodke" />
   <meta name="author" content="Julio Saez-Rodriguez" />
-  <meta name="dcterms.date" content="2023-12-09" />
+  <meta name="dcterms.date" content="2024-03-04" />
   <meta name="keywords" content="markdown, publishing, manubot" />
   <title>Democratizing knowledge representation with BioCypher</title>
   <style>
@@ -81,11 +81,11 @@
   <meta name="citation_title" content="Democratizing knowledge representation with BioCypher" />
   <meta property="og:title" content="Democratizing knowledge representation with BioCypher" />
   <meta property="twitter:title" content="Democratizing knowledge representation with BioCypher" />
-  <meta name="dc.date" content="2023-12-09" />
-  <meta name="citation_publication_date" content="2023-12-09" />
-  <meta property="article:published_time" content="2023-12-09" />
-  <meta name="dc.modified" content="2023-12-09T17:56:36+00:00" />
-  <meta property="article:modified_time" content="2023-12-09T17:56:36+00:00" />
+  <meta name="dc.date" content="2024-03-04" />
+  <meta name="citation_publication_date" content="2024-03-04" />
+  <meta property="article:published_time" content="2024-03-04" />
+  <meta name="dc.modified" content="2024-03-04T19:10:59+00:00" />
+  <meta property="article:modified_time" content="2024-03-04T19:10:59+00:00" />
   <meta name="dc.language" content="en-US" />
   <meta name="citation_language" content="en-US" />
   <meta name="dc.relation.ispartof" content="Manubot" />
@@ -177,9 +177,9 @@
   <meta name="citation_fulltext_html_url" content="https://biocypher.github.io/biocypher-paper/" />
   <meta name="citation_pdf_url" content="https://biocypher.github.io/biocypher-paper/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://biocypher.github.io/biocypher-paper/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://biocypher.github.io/biocypher-paper/v/184a3416c62e143e90b6524a436121e1f68f4d26/" />
-  <meta name="manubot_html_url_versioned" content="https://biocypher.github.io/biocypher-paper/v/184a3416c62e143e90b6524a436121e1f68f4d26/" />
-  <meta name="manubot_pdf_url_versioned" content="https://biocypher.github.io/biocypher-paper/v/184a3416c62e143e90b6524a436121e1f68f4d26/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://biocypher.github.io/biocypher-paper/v/68e8a49dba1dbde91963df97d920013a9d35befa/" />
+  <meta name="manubot_html_url_versioned" content="https://biocypher.github.io/biocypher-paper/v/68e8a49dba1dbde91963df97d920013a9d35befa/" />
+  <meta name="manubot_pdf_url_versioned" content="https://biocypher.github.io/biocypher-paper/v/68e8a49dba1dbde91963df97d920013a9d35befa/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
@@ -196,10 +196,10 @@ <h1 class="title">Democratizing knowledge representation with BioCypher</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://biocypher.github.io/biocypher-paper/v/184a3416c62e143e90b6524a436121e1f68f4d26/">permalink</a>)
+(<a href="https://biocypher.github.io/biocypher-paper/v/68e8a49dba1dbde91963df97d920013a9d35befa/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/biocypher/biocypher-paper/tree/184a3416c62e143e90b6524a436121e1f68f4d26">biocypher/biocypher-paper@184a341</a>
-on December 9, 2023.
+from <a href="https://github.com/biocypher/biocypher-paper/tree/68e8a49dba1dbde91963df97d920013a9d35befa">biocypher/biocypher-paper@68e8a49</a>
+on March 4, 2024.
 </em></small></p>
 <h2 id="authors">Authors</h2>
 <ul>
@@ -986,7 +986,7 @@ <h2 class="page_break_before" id="references">References</h2>
 <div class="csl-left-margin">12. </div><div class="csl-right-inline"><strong>Enhanced Story Comprehension for Large Language Models through Dynamic Document-Based Knowledge Graphs</strong> <div class="csl-block">Berkeley R Andrus, Yeganeh Nasiri, Shilong Cui, Benjamin Cullen, Nancy Fulda</div> <em>Proceedings of the AAAI Conference on Artificial Intelligence</em> (2022-06-28) <a href="https://doi.org/gs5th3">https://doi.org/gs5th3</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1609/aaai.v36i10.21286">10.1609/aaai.v36i10.21286</a></div></div>
 </div>
 <div id="ref-11YmMTmFW" class="csl-entry" role="doc-biblioentry">
-<div class="csl-left-margin">13. </div><div class="csl-right-inline"><strong>A Platform for the Biomedical Application of Large Language Models</strong> <div class="csl-block">Sebastian Lobentanzer, Julio Saez-Rodriguez</div> <em>arXiv</em> (2023) <a href="https://doi.org/gs5th4">https://doi.org/gs5th4</a> <div class="csl-block">DOI: <a href="https://doi.org/10.48550/arxiv.2305.06488">10.48550/arxiv.2305.06488</a></div></div>
+<div class="csl-left-margin">13. </div><div class="csl-right-inline"><strong>A Platform for the Biomedical Application of Large Language Models</strong> <div class="csl-block">Sebastian Lobentanzer, Shaohong Feng, The BioChatter Consortium, Andreas Maier, Cankun Wang, Jan Baumbach, Nils Krehl, Qin Ma, Julio Saez-Rodriguez</div> <em>arXiv</em> (2023) <a href="https://doi.org/gs5th4">https://doi.org/gs5th4</a> <div class="csl-block">DOI: <a href="https://doi.org/10.48550/arxiv.2305.06488">10.48550/arxiv.2305.06488</a></div></div>
 </div>
 <div id="ref-vzPcrJo9" class="csl-entry" role="doc-biblioentry">
 <div class="csl-left-margin">14. </div><div class="csl-right-inline"><strong>Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science</strong> <div class="csl-block">Deepak R Unni, Sierra AT Moxon, Michael Bada, Matthew Brush, Richard Bruskiewich, JHarry Caufield, Paul A Clemons, Vlado Dancik, Michel Dumontier, Karamarie Fecho, … </div> <em>Clinical and Translational Science</em> (2022-06-06) <a href="https://doi.org/gq6hdn">https://doi.org/gq6hdn</a> <div class="csl-block">DOI: <a href="https://doi.org/10.1111/cts.13302">10.1111/cts.13302</a> · PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/36125173">36125173</a> · PMCID: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9372416">PMC9372416</a></div></div>

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