Update UMICollapse to 1.1.0 #51441
Update UMICollapse to 1.1.0 #51441
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Also changes the source GitHub repo to another fork. Some discussion on this in nf-core/rnaseq#1087 (comment)
📝 Walkthrough📝 WalkthroughWalkthroughThe pull request introduces comprehensive updates to the Possibly related PRs
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/umicollapse/meta.yaml (1)
11-11: Consider resetting the build number.For a new version release, it's typically recommended to reset the build number to 0. This allows for potential rebuilds of the same version if needed.
Consider applying the following change:
- number: 1 + number: 0
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- recipes/umicollapse/meta.yaml (3 hunks)
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🔇 Additional comments (3)
recipes/umicollapse/meta.yaml (3)
2-2: Version update looks good.The version has been correctly updated from 1.0.0 to 1.1.0, which is consistent with the PR objective.
14-14: Source URL update looks correct, but requires verification.The source URL has been updated to use the fork by siddharthab, which is consistent with the PR objective. This change addresses the issue of the original author's lack of responsiveness.
Please verify the following:
- Ensure that the siddharthab/UMICollapse repository is a legitimate fork of the original project.
- Confirm that this fork contains the expected updates for version 1.1.0.
- Check if there's any documentation or announcement regarding this change of maintainership.
You can use the following commands to gather more information:
#!/bin/bash # Description: Gather information about the new source repository # Check if the repository exists and is public gh repo view siddharthab/UMICollapse # List tags to verify the presence of v1.1.0 gh api repos/siddharthab/UMICollapse/tags --jq '.[].name' # Check for any README updates or announcements about the fork gh api repos/siddharthab/UMICollapse/readme | jq -r .content | base64 -d | grep -i "fork"
3-3: Verify the SHA256 checksum.The SHA256 checksum has been updated. Please ensure that this new checksum correctly corresponds to the source package for version 1.1.0.
To verify the checksum, you can use the following command:
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🧹 Outside diff range and nitpick comments (1)
recipes/umicollapse/meta.yaml (1)
40-40: LGTM: DOI addition is valuable. Consider formatting improvement.The addition of the DOI is excellent for citing the associated research paper. To improve readability and searchability, consider formatting it as a full URL.
Consider updating the DOI to a full URL:
- minutes with this tool with real datasets! doi 10.7717/peerj.8275. + minutes with this tool with real datasets! DOI: https://doi.org/10.7717/peerj.8275
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- recipes/umicollapse/meta.yaml (2 hunks)
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recipes/umicollapse/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (4)
recipes/umicollapse/meta.yaml (4)
1-3: LGTM: Package metadata updates look good.The changes to the package name, version, and SHA256 checksum are consistent with the PR objectives. The lowercase package name aligns with common naming conventions.
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🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
10-13: LGTM: Build section updates are appropriate.The build number reset to 0 is correct for a new package version. The addition of the
run_exportssection withpin_subpackageis a good practice for maintaining ABI compatibility across minor version updates.
Line range hint
19-39: LGTM: Unchanged sections maintain consistency.The requirements, test, and about sections remain unchanged, which is appropriate for a version update that doesn't introduce new dependencies or change the package's core functionality.
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🪛 yamllint
[error] 37-37: trailing spaces
(trailing-spaces)
[error] 38-38: trailing spaces
(trailing-spaces)
[error] 39-39: trailing spaces
(trailing-spaces)
16-16: Verify the new source repository.The source URL has been updated to use the new fork as mentioned in the PR objectives. This change looks good, but it's important to ensure that the new repository is properly maintained and contains the expected code for version 1.1.0.
To verify the new source repository, please run the following script:
Also changes the source GitHub repo to another fork because the original author is non-responsive.
Some discussion on this in nf-core/rnaseq#1087 (comment)
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