Bio2BEL PheWAS Catalog

Disease associations to variants and genes

Installation

bio2bel_phewascatalog can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_phewascatalog

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/phewascatalog.git

Setup

PheWAS Catalog can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_phewascatalog
>>> phewascatalog_manager = bio2bel_phewascatalog.Manager()
>>> phewascatalog_manager.populate()

Command Line Utility

bio2bel_phewascatalog populate