save batch to output dataset

bids-apps · Sep 17, 2024 · 4af6ef0 · 4af6ef0
1 parent c3dbfc9
commit 4af6ef0
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/code/main.py b/code/main.py
@@ -123,6 +123,15 @@ def main():
 
         logger.info(f"{segment_type=} - using batch {batch}.")
 
+        (output_dir / "logs").mkdir(exist_ok=True, parents=True)
+        shutil.copy2(
+            src=Path("/opt")
+            / f'CAT12{os.environ["CAT_VERSION"]}'
+            / "standalone"
+            / batch,
+            dst=output_dir / "logs",
+        )
+
         generate_method_section(output_dir=output_dir, batch=batch)
 
         text = "processing subjects"