Merge pull request #9 from BIDS-Apps/chrisfilo-patch-1

Do not attempt to run hires mode

baracus/utils.py

@@ -36,6 +36,7 @@ def run_fs_if_not_available(bids_dir, freesurfer_dir, subject_label, license_key
 
         if fs_missing:
             cmd = "run_freesurfer.py {in_dir} {out_dir} participant " \
+                  "--hires_mode disable " \
                   "--participant_label {subject_label} " \
                   "--license_key {license_key} " \
                   "--n_cpus {n_cpus} --steps cross-sectional".format(in_dir=bids_dir,
@@ -72,4 +73,4 @@ def get_subjects_session(layout, participant_label, truly_longitudinal_study):
         else:
             freesurfer_subjects.append("sub-{sub}".format(sub=subject))
 
-    return subjects_to_analyze, sessions_to_analyze, freesurfer_subjects
+    return subjects_to_analyze, sessions_to_analyze, freesurfer_subjects