add worfklow to test lastes #1
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--- | |
name: test latest image | |
on: | |
push: | |
branches: ['*'] | |
schedule: | |
- cron: 0 0 1 * * | |
workflow_dispatch: | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test_dataset_without_session: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y tree | |
- name: pull docker image | |
run: docker pull bids/baracus | |
- name: get data | |
run: | | |
wget https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/utils/get_data_from_osf.sh | |
bash get_data_from_osf.sh ds114_test1 | |
bash get_data_from_osf.sh ds114_test1_freesurfer | |
- name: help | |
run: | | |
docker run -t --rm bids/baracus --help | |
docker run -t --rm bids/baracus --version | |
- name: run | |
run: | | |
docker run --rm -ti \ | |
-v ${HOME}/data/ds114_test1:/data/in \ | |
-v ${HOME}/data/ds114_test1_freesurfer:/data/fs \ | |
-v ${HOME}/data/ds114_test1:/data/out \ | |
bids/baracus \ | |
/data/in /data/out participant \ | |
--freesurfer_dir /data/fs \ | |
--license_key="~/test.key" | |
- name: check output | |
run: tree ${HOME}/data/ds114_test1 |