Update ARETE

beiko-lab · Feb 23, 2024 · d3b1038 · d3b1038
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Showing 4 changed files with 13 additions and 17 deletions.
diff --git a/_includes/call-to-action.html b/_includes/call-to-action.html
@@ -2,10 +2,10 @@
     <div class="container">
         <div class="row">
             <div class="col-lg-8 col-lg-offset-2 text-center">
-                <h2 class="section-heading">Investigate Lateral Transfer of Antimicrobial Resistance using the ARETE Workflow?
+                <h2 class="section-heading">Characterising Lateral Transfer of Antimicrobial Resistance?
 </h2>
                 <hr class="light">
-                <a href="https://github.com/beiko-lab/arete" class="btn btn-default btn-xl">Come Try It!</a>
+                <a href="https://github.com/beiko-lab/arete" class="btn btn-default btn-xl">Try the ARETE workflow!</a>
             </div>
         </div>
     </div>

diff --git a/_includes/header.html b/_includes/header.html
@@ -1,10 +1,9 @@
 <header>
     <div class="header-content">
         <div class="header-content-inner">
-            <h1>ARETE Project (now concluded)</h1>
+            <h1>ARETE Project</h1>
             <hr>
-            <p>Using lateral gene transfer of antimicrobial resistance genes in
-            environmental and agri-food contexts with bioinformatics approaches.</p>
+            <p>Now concluded project using lateral gene transfer of antimicrobial resistance genes in environmental and agri-food contexts with bioinformatics approaches.</p>
             <a href="#about" class="btn btn-primary btn-xl page-scroll">Find Out More</a>
         </div>
     </div>

diff --git a/_includes/nav.html b/_includes/nav.html
@@ -8,7 +8,7 @@
                 <span class="icon-bar"></span>
                 <span class="icon-bar"></span>
             </button>
-            <a class="navbar-brand page-scroll" href="#page-top">ARETE</a>
+            <a class="navbar-brand page-scroll" href="#page-top">ARETE (now finished)</a>
         </div>
 
         <!-- Collect the nav links, forms, and other content for toggling -->

diff --git a/_includes/overview.html b/_includes/overview.html
@@ -13,23 +13,20 @@ <h2 class="section-heading">Project Outcomes</h2>
             <div class="col-lg-4 col-md-6 text-center">
             <div class="service-box">
             <i class="fa fa-4x fa-circle-o wow bounceIn text-primary"></i>
-            <h3>Genetic Elements of Transmission</h3>
-            <p class="text-muted">Profiling AMR transmission by improved 
-            detection of mobile genetic elements.<br />
-            A) Environmental plasmid reconstruction.<br />
-            B) Genomic Island delineation. <br />
-            C) Mobilome CARD curation. <br />
-            D) Clustering mobile elements. <br />
+            <h3>CARD Resistomes with plasmids & genomic islands</h3>
+            <p class="text-muted">Addition of plasmid and genomic island
+            annotations to the CARD Resistomes dataset.<br />
+            Data available <a href="https://card.mcmaster.ca/genomes">here</a>.<br />
             </p>
             </div>
             </div>
             <div class="col-lg-4 col-md-6 text-center">
             <div class="service-box">
             <i class="fa fa-4x fa-tree wow bounceIn text-primary" data-wow-delay=".1s"></i>
             <h3>Example project publications/theses</h3>
-            <p class="text-muted">[Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents Open Access](https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000880 ) <br />
-            [New Delhi Metallo-beta-lactamase (NDM) plasmid predictions](https://macsphere.mcmaster.ca/handle/11375/25906)<br />
-            [Implementation and Optimisations for Computing Maximum Agreement Forests for Rooted Multifurcating Trees](https://dcsi.cs.dal.ca/wp-content/uploads/2021/07/15.pdf)<br />
+            <p class="text-muted"><a href="https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000880">Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents Open Access</a> <br />
+            <a href="https://macsphere.mcmaster.ca/handle/11375/25906">New Delhi Metallo-beta-lactamase (NDM) plasmid predictions</a><br />
+            <a href="https://dcsi.cs.dal.ca/wp-content/uploads/2021/07/15.pdf">Implementation and Optimisations for Computing Maximum Agreement Forests for Rooted Multifurcating Trees</a><br />
             </p>
             </div>
             </div>
@@ -38,7 +35,7 @@ <h3>Example project publications/theses</h3>
             <i class="fa fa-4x fa-code wow bounceIn text-primary" data-wow-delay=".1s"></i>
             <h3>ARETE Pipeline Development</h3>
             <p class="text-muted">Development of a nextflow pipeline consolidating
-            new and improved methods: available [here](https://github.com/beiko-lab/arete)
+            new and improved methods: available <a href="https://github.com/beiko-lab/arete">here</a>
             </p>
             </div>
             </div>