Skip to content

Compare validation outputs from bcbio against existing truth sets

Notifications You must be signed in to change notification settings

bcbio/bcbio-validation-checker

Repository files navigation

Check bcbio validation runs

Compare validation outputs from bcbio against existing truth sets. Designed for the GA4GH-DREAM Tool Execution Challenge, this provides a Docker container and CWL wrapper for verifying that a bcbio validation is correct. bcbio itself runs alignment, variantcalling and validation against known truth sets from Genome in a Bottle reporting sensitivity and specificity for samples and methods. This look takes these outputs and ensures they match previous results.

About

Compare validation outputs from bcbio against existing truth sets

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published