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json data export
Austin Richardson edited this page Jan 22, 2015
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It is possible to export the feature relationships graph to serialized JSON. This is useful for doing data-mining stuff outside of the web app.
I plan on also using this to communicate with a separate "data mining" process that returns data to the Rails app.
to dump the feature relationships table do
rake to_json > dump.json
The format looks like:
{
"genome_id" : 1,
"organism" : "Bacteroides dorei ...",
"assembly_id" : 183078,
"features" : [
{
"id" : 3,
"start" : 1,
"stop": 400,
"related" : [
{
"similarity" : 0,
"id" : 3
}
]
}
]
}