VERSION 0.6.0

anyoptimization · Jul 30, 2022 · fb164b2 · fb164b2
1 parent f9dd51f
commit fb164b2
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Showing 104 changed files with 1,513 additions and 1,460 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -1,3 +1,3 @@
 * linguist-detectable=false
 *.py linguist-detectable=true
-
+*.ipynb filter=remove-notebook-output
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,4 +1,4 @@
 prune .
 recursive-include pymoo *.py *.pyx
-recursive-include pymoo/cython/vendor *.c *.h
+recursive-include pymoo/cython/vendor *.cpp *.h
 include LICENSE Makefile
diff --git a/docs/run.py b/docs/run.py
@@ -9,6 +9,8 @@
 
 IPYNBS = [e for e in files_from_folder(DOCS, regex='**/*.ipynb', skip=SKIP) if ".ipynb_checkpoints" not in e]
 
+IPYNBS = ['/Users/blankjul/workspace/pymoo/docs/source/algorithms/usage.ipynb',
+          '/Users/blankjul/workspace/pymoo/docs/source/algorithms/moo/nsga2.ipynb']
 
 failed = []
 

diff --git a/docs/source/_theme/layout.html b/docs/source/_theme/layout.html
@@ -113,7 +113,7 @@
         </div>
 
 
-        <div id="main-content" class="col py-3 px-6 px-md-4">
+        <div id="main-content" class="col py-3 px-6 col-md-9 px-md-4">
 
             <div>
                 {{ super() }}

diff --git a/docs/source/_theme/theme.conf b/docs/source/_theme/theme.conf
@@ -1,7 +1,7 @@
 [theme]
 inherit = pydata_sphinx_theme
 pygments_style = tango
-sidebars = search-field.html, sbt-sidebar-nav.html, sbt-sidebar-footer.html
+sidebars = sidebar-search-bs.html, sbt-sidebar-nav.html, sbt-sidebar-footer.html
 stylesheet = sphinx-book-theme.da26317cf37e5c4af2fa3e6253912353.css
 
 [options]

diff --git a/docs/source/algorithms/hyperparameters.ipynb b/docs/source/algorithms/hyperparameters.ipynb
@@ -54,10 +54,10 @@
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+     "iopub.execute_input": "2022-07-30T17:25:21.043948Z",
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@@ -100,10 +100,10 @@
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@@ -155,10 +155,10 @@
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+     "iopub.execute_input": "2022-07-30T17:25:31.696459Z",
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@@ -212,10 +212,10 @@
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@@ -269,10 +269,10 @@
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-     "shell.execute_reply": "2022-07-29T18:22:17.733006Z"
+     "iopub.execute_input": "2022-07-30T17:25:53.299099Z",
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      "name": "#%%\n"

diff --git a/docs/source/algorithms/index.ipynb b/docs/source/algorithms/index.ipynb
@@ -79,7 +79,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -93,7 +93,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.5"
+   "version": "3.8.8"
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   "pycharm": {
    "stem_cell": {

diff --git a/docs/source/algorithms/initialization.ipynb b/docs/source/algorithms/initialization.ipynb
@@ -3,6 +3,9 @@
   {
    "cell_type": "raw",
    "metadata": {
+    "pycharm": {
+     "name": "#%% raw\n"
+    },
     "raw_mimetype": "text/restructuredtext"
    },
    "source": [
@@ -11,21 +14,33 @@
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "# Initialization"
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "Algorithms are directly initialized using the corresponding constructor."
    ]
   },
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "Directly initializing the object keeps the code clean and if you use an idea lets you quickly jump to the definition of the algorithm and find hyperparameters to modify."
    ]
@@ -35,10 +50,13 @@
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+    },
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+     "name": "#%%\n"
     },
     "tags": []
    },

diff --git a/docs/source/algorithms/moo/age.ipynb b/docs/source/algorithms/moo/age.ipynb
@@ -60,10 +60,10 @@
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     "execution": {
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@@ -104,10 +104,10 @@
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     },
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diff --git a/docs/source/algorithms/moo/age2.ipynb b/docs/source/algorithms/moo/age2.ipynb
@@ -37,10 +37,10 @@
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diff --git a/docs/source/algorithms/moo/ctaea.ipynb b/docs/source/algorithms/moo/ctaea.ipynb
@@ -33,10 +33,10 @@
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@@ -77,10 +77,10 @@
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diff --git a/docs/source/algorithms/moo/dnsga2.ipynb b/docs/source/algorithms/moo/dnsga2.ipynb
@@ -34,10 +34,10 @@
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+     "shell.execute_reply": "2022-07-30T17:28:13.911576Z"
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diff --git a/docs/source/algorithms/moo/moead.ipynb b/docs/source/algorithms/moo/moead.ipynb
@@ -24,10 +24,10 @@
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+     "iopub.execute_input": "2022-07-30T17:26:51.633147Z",
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diff --git a/docs/source/algorithms/moo/nsga2.ipynb b/docs/source/algorithms/moo/nsga2.ipynb
@@ -88,10 +88,10 @@
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@@ -130,10 +130,10 @@
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@@ -185,7 +185,7 @@
  "metadata": {
   "celltoolbar": "Raw Cell Format",
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },

diff --git a/docs/source/algorithms/moo/nsga3.ipynb b/docs/source/algorithms/moo/nsga3.ipynb
@@ -81,10 +81,10 @@
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-     "shell.execute_reply": "2022-07-29T18:25:35.442781Z"
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@@ -119,10 +119,10 @@
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diff --git a/docs/source/algorithms/moo/rnsga2.ipynb b/docs/source/algorithms/moo/rnsga2.ipynb
@@ -64,10 +64,10 @@
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