feat(refactor): comment out python vs R loading options in `Asses…
#34
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| name: CI | |
| # Enable Buildkit and let compose use it to speed up image building | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| CONDA_ENV_NAME: clim-recal | |
| MIN_PYTHON_VERSION: 3.9 | |
| PYTHON_MODULE_FOLDER: /home/jovyan/python/ | |
| COVERAGE_SVG_FOLDER: docs/assets/ | |
| COVERAGE_SVG_FILE_NAME: coverage.svg | |
| # replace below with references to previous config lines | |
| COVERAGE_SVG_PATH: docs/assets/coverage.svg | |
| on: | |
| pull_request: | |
| branches: ['main', 'ruth-notebook-for-workshop'] | |
| paths-ignore: ['docs/**'] | |
| push: | |
| branches: ['main', 'ruth-notebook-for-workshop'] | |
| paths-ignore: ['docs/**'] | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: write | |
| jobs: | |
| linter: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/checkout@main | |
| - name: Set up Python | |
| uses: actions/setup-python@main | |
| with: | |
| python-version: ${{ env.MIN_PYTHON_VERSION }} | |
| - name: Run pre-commit | |
| uses: pre-commit/action@main | |
| - name: Update pre-commit | |
| uses: pre-commit-ci/[email protected] | |
| if: always() | |
| # With no caching at all the entire ci process takes 4m 30s to complete! | |
| pytest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/checkout@main | |
| - name: Build, Test and Save Test Coverage | |
| run: | | |
| docker compose build | |
| docker compose up --detach | |
| docker compose exec jupyter bash -c "conda run -n $CONDA_ENV_NAME --cwd python pytest -p no:sugar" | |
| export JUPYTER_ID=$(docker compose ps -q jupyter) | |
| echo "jupyter_id=$JUPYTER_ID" >> $GITHUB_ENV | |
| echo "jupyter_id=$JUPYTER_ID" | |
| - name: Check accessing saved jupyter_id | |
| run: | | |
| echo ${{ env.jupyter_id }} | |
| - name: Copy test coverage results | |
| run: | | |
| docker cp ${{ env.jupyter_id }}:${{ env.PYTHON_MODULE_FOLDER }}${{ env.COVERAGE_SVG_PATH }} ${{ env.COVERAGE_SVG_FOLDER }} | |
| - name: Archive coverage svg | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-badge | |
| path: ${{ env.COVERAGE_SVG_PATH }} | |
| - name: Tear down the Stack | |
| run: docker compose down | |
| docs: | |
| needs: [linter, pytest] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.MIN_PYTHON_VERSION }} | |
| - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV | |
| name: Update cache_id | |
| - name: Download coverage svg | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage-badge | |
| path: ${{ env.COVERAGE_SVG_PATH }} | |
| - name: Build quarto | |
| run: | | |
| docker compose build | |
| # docker cp ${{ env.jupyter_id }}:app/docs/assets/coverage.svg docs/assets/ | |
| docker compose up --detach | |
| docker cp $(docker compose ps -q docs):/usr/local/apache2/htdocs/ . | |
| # - name: Build docker quarto | |
| # run: | | |
| # docker compose build | |
| # docker cp ${{ env.jupyter_id }}:app/docs/assets/coverage.svg docs/assets/ | |
| # docker compose up --detach | |
| # docker cp $(docker compose ps -q docs):/usr/local/apache2/htdocs/ . | |
| # docker cp $(docker compose ps -q docs)/app/_site/ /usr/local/apache2/htdocs/ | |
| # - name: Apply mkdocs cache | |
| # uses: actions/cache@v3 | |
| # with: | |
| # key: mkdocs-material-${{ env.cache_id }} | |
| # path: .cache | |
| # restore-keys: | | |
| # mkdocs-material- | |
| # | |
| # - name: Install doc dependencies via poetry | |
| # run: | | |
| # pip install poetry | |
| # poetry install --with docs | |
| # | |
| # - name: Build docs with gh-deploy --force | |
| # run: | | |
| # poetry run mkdocs gh-deploy --force |