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Optimise hdf5 #36
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Optimise hdf5 #36
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hllelli2
commented
Oct 1, 2024
- MapDataset, ArrayDataset and MapDataloader to handle inputs of .mrc or .map data.
- Transformations and Augmentations build upon CCPEM_Utils.
- Hdf5 intermediate data store
- Added accompanying tests
- Added basic pip install
…d arrays into the hdf5 without a file.
…the dataloader, augment them and saves them to array. For a specific usecase in ml-toolkit
…atible with ArrayDataset
…t sure if needed for multi-class porblems
:return: (np.ndarray) rotated volume or (np.ndarray, int, int) rotated volume and rotation parameters | ||
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def __init__(self, random_seed: int = 42): |
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Do we need the random seed argument here. Does seem to be used?
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Oh its not implemented yet!
@hllelli2 : Overall it looks good. I have added a few comments/suggestions. It is good to go once these are addressed. |
…unction. This allows any keywords to be applied to all MapDatasets.
…c in MapObjectVoxelNormalisation