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Updating the *before_notebook* 20_start-postgresql.sh and 40_prepare_aiida.sh #476

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merged 8 commits into from
Jul 4, 2024
Merged

Updating the *before_notebook* 20_start-postgresql.sh and 40_prepare_aiida.sh #476

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6428b39
Updating the *before_notebook* 20_ and 40_ files. Fixings are done as
mikibonacci Jul 3, 2024
9bb9234
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 3, 2024
604d0e6
Update stack/base-with-services/before-notebook.d/20_start-postgresql.sh
mikibonacci Jul 3, 2024
23c6120
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jul 3, 2024
8be6bf6
Clean up stale PID-files before `verdi migrate --force` in `40_prepar…
mikibonacci Jul 4, 2024
75e6811
Update stack/base/before-notebook.d/40_prepare-aiida.sh
mikibonacci Jul 4, 2024
201ba78
pgrep verdi daemon
danielhollas Jul 4, 2024
25e937b
Fix rm command
danielhollas Jul 4, 2024
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3 changes: 2 additions & 1 deletion stack/base-with-services/before-notebook.d/20_start-postgresql.sh
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Expand Up @@ -22,7 +22,8 @@ else
chmod -R g-rwxs "${PGDATA}"

if [[ -f ${PGDATA}/logfile ]]; then
mv "${PSQL_LOGFILE}" "${PSQL_LOGFILE}.1" && gzip "${PSQL_LOGFILE}.1"
rm -f "${PSQL_LOGFILE}.1.gz"
mv "${PSQL_LOGFILE}" "${PSQL_LOGFILE}.1" && gzip "${PSQL_LOGFILE}.1"
fi
# Cleaning up the mess if PostgreSQL was not shutdown properly.
rm -vf "${PGDATA}/postmaster.pid"
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3 changes: 3 additions & 0 deletions stack/base/before-notebook.d/40_prepare-aiida.sh
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Expand Up @@ -74,6 +74,9 @@ load_computer('${computer_name}').set_minimum_job_poll_interval(${job_poll_inter
else

# Migration will run for the default profile.
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pgrep -af 'verdi.* daemon' && echo "ERROR: AiiDA daemon is already running!" && exit 1
## clean up stale PID-files -> .aiida/daemon/circus-{profile-name}.pid
rm -f /home/${NB_USER}/.aiida/daemon/circus-*.pid
verdi storage migrate --force

fi
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