LORIS-MRI Release v26.0.0

This release of the LORIS-MRI repository accompanies the LORIS 26.0.0 release

• List of all LORIS-MRI 26.0.0 changes (not including schema and module changes which were contributed to the main LORIS repo)
• Full Changelog: v25.0.0...v26.0.0

New Features

• Added HED Support and replaced annotations by EEG BIDS events by @jeffersoncasimir in #1041
• Use the CenterID instead of the CenterName to identify scans by @nicolasbrossard in #1043

Fixes

Install improvements

• Minor changes to the environment logic for the install by @laemtl in #1134
• Fix Blake2 PERL Module for earlier releases of Ubuntu by @laemtl in #1135 and #1136

Perl scripts improvements

• Properly set field TarchiveSeriesID for acquisitions that do not have an echo time when inserting data in tarchive_series by @nicolasbrossard in #1055
• Improve command line arguments validation of minc_insertion.pl by @nicolasbrossard in #1123
• Remove the extra constraint in register_processed_data.pl saying that the SourceFileID provided as an argument to the script should not be listed in InputFileIDs provided as an argument to the script by @cmadjar in #1097
• Fix ProjectID error triggered when running register_processed_data.pl by @cmadjar in #1103

Python dcm2niix scripts

• Fix NoneType error when S3 configs are not set properly by @cmadjar in #1110
• Fix NoneType error when running run_dicom_archive_validation.py on an inexistant UploadID by @cmadjar in #1111

BIDS import and EEG pipeline

• Bug fix in electrode insertion, where more than one electrode was being inserted every time by @jeffersoncasimir in #1017
• Added validSamples to index.json by @jeffersoncasimir in #1030
• Fixed typos preventing bids_import.py to run by @jeffersoncasimir in #1129
• Replaced instances of 'derivatives' with 'derivative' by @jeffersoncasimir in #1130
• Fix off-by-one error of mass_electrophysiology_chunking.py by @jeffersoncasimir in #1131

Tools

• Fixes segmentation fault error when running delete_imaging_upload.pl script by @nicolasbrossard #1121
• Fixes of the cronjob for PET uploads by @laemtl in #1113
• Fix JSON format produced by minc_to_bids_converter.pl by @CamilleBeau in #1127

New Contributors

• @CamilleBeau made their first contribution in #1127

Full Changelog: v25.0.0...v26.0.0

Notes for existing projects

If you plan to use the HED support we developed for the bids_import.py pipeline, make sure to run the PHP script on the LORIS side: https://github.com/aces/Loris/blob/main/tools/importers/insert_hed_schema.php