Update predict.py #3
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added functions process_contours and check_max_size. process_contours is for filling in the hole in the mask and check_size will threshold the size.
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snakemake pipeline changes with it |
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added functions process_contours and check_max_size. process_contours is for filling in the hole in the mask and check_size will threshold the size. These are optional and if using add the params in the config file along with the sankemake rule