Merge pull request #77 from UM-Bridge/CI-fix

Another fix for gs2 and achlys
UM-Bridge · May 20, 2024 · d17687f · d17687f
2 parents 91a9938 + 5d3062e
commit d17687f
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diff --git a/models/achlys/Dockerfile b/models/achlys/Dockerfile
@@ -1,8 +1,8 @@
-FROM linusseelinger/achlys-ubuntu
+FROM sdixonukaea/achlys-ubuntu:latest
 
 RUN apt update && apt install -y inotify-tools python3-pip python3-venv && \
     python3 -m venv venv && . venv/bin/activate && \
-    pip3 install umbridge && \
+    pip3 install umbridge numpy scipy pandas && \
     rm -rf /var/lib/apt/lists/*
 
 COPY server.py /server.py

diff --git a/models/gs2/server.py b/models/gs2/server.py
@@ -34,7 +34,7 @@ def __call__(self, parameters, config):
 
         # Run the model 
         mpirank = config.get("ranks", 4)
-        os.system(f"mpirun -n {mpirank} /usr/gs2/bin/gs2 {input_file}")
+        os.system(f"mpirun --allow-run-as-root -n {mpirank} /usr/gs2/bin/gs2 {input_file}") # --allow-run-as-root to suppress OMPI error, not reccomended when running outside of docker!
 
         # Read results using Pyrokinetics package and print output
         gs2_input = input_file