- Omission of ggupset in DESCRIPTIitON file rectified.

DESCRIPTION

@@ -3,8 +3,8 @@ Type: Package
 Title: A framework for cross-validated classification problems, with
        applications to differential variability and differential
        distribution testing
-Version: 3.5.16
-Date: 2023-09-30
+Version: 3.5.17
+Date: 2023-10-03
 Authors@R:
     c(
     person(given = "Dario", family = "Strbenac", email = "[email protected]", role = c("aut", "cre")),
@@ -20,7 +20,7 @@ VignetteBuilder: knitr
 Encoding: UTF-8
 biocViews: Classification, Survival
 Depends: R (>= 4.1.0), generics, methods, S4Vectors, MultiAssayExperiment, BiocParallel, survival
-Imports: grid, genefilter, utils, dplyr, tidyr, rlang, ranger, ggplot2 (>= 3.0.0), ggpubr, reshape2
+Imports: grid, genefilter, utils, dplyr, tidyr, rlang, ranger, ggplot2 (>= 3.0.0), ggpubr, reshape2, ggupset
 Suggests: limma, edgeR, car, Rmixmod, gridExtra (>= 2.0.0), cowplot,
         BiocStyle, pamr, PoiClaClu, parathyroidSE, knitr, htmltools, gtable,
         scales, e1071, rmarkdown, IRanges, robustbase, glmnet, class, randomForestSRC,

R/performancePlot.R

@@ -111,6 +111,8 @@ setMethod("performancePlot", "list",
     stop("The package 'ggplot2' could not be found. Please install it.")             
   if(!requireNamespace("scales", quietly = TRUE))
     stop("The package 'scales' could not be found. Please install it.")
+  if(!requireNamespace("ggupset", quietly = TRUE))
+    stop("The package 'ggupset' could not be found. Please install it.")              
 
   densityStyle <- match.arg(densityStyle)
   densityStyle <- ifelse(densityStyle == "box", ggplot2::geom_boxplot, ggplot2::geom_violin)

R/selectionPlot.R

@@ -158,6 +158,8 @@ setMethod("selectionPlot", "list",
     stop("The package 'ggplot2' could not be found. Please install it.")             
   if(!requireNamespace("scales", quietly = TRUE))
     stop("The package 'scales' could not be found. Please install it.")
+  if(!requireNamespace("ggupset", quietly = TRUE))
+    stop("The package 'ggupset' could not be found. Please install it.")              
   if(comparison == "within" && !is.null(referenceLevel))
     stop("'comparison' should not be \"within\" if 'referenceLevel' is not NULL.")