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refactor: Apply .clang-format coding style #1

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refactor: Apply .clang-format coding style #1

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41 changes: 41 additions & 0 deletions .clang-format
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Original file line number Diff line number Diff line change
@@ -0,0 +1,41 @@
# https://clang.llvm.org/docs/ClangFormatStyleOptions.html
BasedOnStyle: LLVM

# indent 4 spaces
IndentWidth: 4

# break before function
#BreakBeforeBraces: Linux
BreakBeforeBinaryOperators: NonAssignment
#BreakBeforeTernaryOperators: true
BreakConstructorInitializers: AfterColon
AllowShortFunctionsOnASingleLine: false
# Pas de saut de ligne entre type de retour et fonction
AlwaysBreakAfterDefinitionReturnType: None
PenaltyReturnTypeOnItsOwnLine: 300
BreakBeforeBraces: Custom
BraceWrapping:
AfterClass: true
AfterControlStatement: true
AfterEnum: true
AfterFunction: true
AfterNamespace: true
AfterObjCDeclaration: true
AfterStruct: true
AfterUnion: true
AfterExternBlock: false
BeforeCatch: false
BeforeElse: true
IndentBraces: false
SplitEmptyFunction: true
SplitEmptyRecord: true
SplitEmptyNamespace: true

ColumnLimit: 180

# arguments and parameters in same line or one line for each
BinPackArguments: false
BinPackParameters: false

# keep up to two empty lines
MaxEmptyLinesToKeep: 2
256 changes: 140 additions & 116 deletions baumwelch.cc
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31 changes: 15 additions & 16 deletions baumwelch.h
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@@ -1,33 +1,32 @@
#ifndef BAUMWELCH_H
#define BAUMWELCH_H

#include <cmath>
#include <cstdlib>
#include <vector>
#include <fstream>
#include <iostream>
#include <map>
#include <sstream>
#include <iostream>
#include <string>
#include <cmath>
#include <fstream>
#include <vector>

#include "obsData.h"
#include "modelprob.h"
#include "hmmresults.h"
#include "modelprob.h"
#include "obsData.h"

using namespace std ;
using namespace std;

class baumWelch
{
public:
baumWelch(obsSequence *data);
void computeBaumWelch(hmmResults *results, modelProb *model );
void computeBaumWelch3states(hmmResults *results, modelProb *model );
public:
baumWelch(obsSequence *data);
void computeBaumWelch(hmmResults *results, modelProb *model);
void computeBaumWelch3states(hmmResults *results, modelProb *model);

protected:
obsSequence *mObsSequence;
hmmResults *mHmmResults;
modelProb *mModelProb;
protected:
obsSequence *mObsSequence;
hmmResults *mHmmResults;
modelProb *mModelProb;
};

#endif // BAUMWELCH_H

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