maize_microbiome_transcriptomics

Description

Repository storing analyses during Dr. Santos internship at UGA - Wallace Lab.

Results from analysis of RNAseq, 16S and correlation between both will be included here.

Researchers

• Dr. Renato Augusto Corrêa dos Santos
• Professor Dr. Jason Wallace
• Professor Dr. Diego M. Riaño-Pachón

Wiki page

Research results will are included in our wiki page.

• Poster presentation: IPBGG 2024 retreat (May 15-17, 2024)

Dependencies

Virtual env for all analyses

virtualenv --python=python3.10 .venv
source .venv/bin/activate
pip install -r requirements.txt

Institutional Support

• Computational, Evolutionary, and Systems Biology Laboratory (LabBCES)
• Nuclear Center of Energy in Agriculture (CENA), University of Sao Paulo, Piracicaba, SP, Brazil
• Wallace Lab
• University of Georgia (UGA), Athens, GA, USA

Funding

• São Paulo Research Foundation (FAPESP), São Paulo, SP, Brazil (grant number 2023/11133-3)