end-of-file-fixer

.github/workflows/main.yml

@@ -32,4 +32,4 @@ jobs:
           . venv/bin/activate
           pushd src/lib
           python -m pip install -r requirements.txt -r requirements-dev.txt
-          python -m pytest SmiServices/*.py
+          python -m pytest SmiServices/*.py

doc/annotation_service_docker.md

@@ -89,4 +89,3 @@ docker exec -it $(docker ps|grep annotation_server|awk '{print$1}') /bin/bash
 docker login
 docker push howff/annotation_server
 ```
-

doc/cui_sop.txt

@@ -280,4 +280,3 @@ sort -u <(jq -r < *lts/doc0001.json '.annotations[]|.cui') <(jq -r < *lts/doc011
   sed -e "s/^/'/" -e "s/$/'/" | paste -s -d ','
 
 explain analyze select semehr_results from semehr_results where sopinstanceuid = any (array(select SOPInstanceUID from cui_sop where cui IN ('C0000726','C0001511','C0003611', ..., 'C4553491')));
-

src/ehost/annotationadmin.xml

@@ -1 +1 @@
-<?xml version="1.0" encoding="UTF-8"?><catalog><server url="localhost" port="8080"/></catalog>
+<?xml version="1.0" encoding="UTF-8"?><catalog><server url="localhost" port="8080"/></catalog>

src/ehost/eHOST.sys

@@ -39,4 +39,3 @@ true
 
 [RESTFUL_SERVER]
 false
-

src/ehost/test1/config/projectschema.xml

@@ -35,4 +35,3 @@
         </classDef>
     </classDefs>
 </eHOST_Project_Configure>
-

src/tools/ehost.sh

@@ -19,4 +19,3 @@ cp $data_dir/mtsamples_ihi_docs/doc000?.txt            $ehost_dir/$ehost_project
 
 cd $ehost_dir
 java -jar ehost-1.31-SNAPSHOT.jar
-

src/tools/mongo_init_01.js

@@ -19,4 +19,3 @@ db.createUser(
 );
 
 // No need to do this, next script will restart mongo: db.adminCommand( { shutdown: 1 } )
-

src/tools/mongo_init_02.sh

@@ -19,4 +19,3 @@ else
 	# New style service
 	sudo systemctl restart mongod
 fi
-

src/tools/sample_SR.sh

@@ -45,4 +45,3 @@ sed -n -e 's,\\,\\\\,' -e '2,$s/,/ /gp' sample_SR.csv | while read id sop series
     fi
 
 done
-