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| name: Environment and Script Check | |
| on: | |
| push: | |
| branches: [ main, dev ] | |
| pull_request: | |
| branches: [ main, dev ] | |
| jobs: | |
| check-environment-and-run-script: | |
| name: Check Environment and Run Script | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-activate-base: false | |
| activate-environment: anomllm | |
| environment-file: environment.yml | |
| - name: Create Conda environment and install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| poetry install --no-root --with dev | |
| - name: Save credentials | |
| run: echo "${{ secrets.CREDENTIALS }}" > credentials.yml | |
| - name: Convert Jupyter notebook to Python script | |
| shell: bash -l {0} | |
| run: | | |
| jupyter nbconvert --to script notebook/example.ipynb | |
| - name: Run converted script | |
| shell: bash -l {0} | |
| env: | |
| PYTHONPATH: ${{ github.workspace }}/src | |
| run: | | |
| wget https://github.com/peak/s5cmd/releases/download/v2.2.2/s5cmd_2.2.2_Linux-64bit.tar.gz | |
| tar -xzvf s5cmd_2.2.2_Linux-64bit.tar.gz | |
| chmod +x s5cmd | |
| ./s5cmd --no-sign-request --endpoint-url https://s3-west.nrp-nautilus.io cp "s3://anomllm/data/*" data/ | |
| python notebook/example.py |