add 20210105 daily bits

RobertsLab · Jan 8, 2024 · eb848ca · eb848ca
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diff --git a/docs/posts/2024/2024-01-02-Daily-Bits---January-2024/index.html b/docs/posts/2024/2024-01-02-Daily-Bits---January-2024/index.html
@@ -200,12 +200,16 @@ <h1 class="title">Daily Bits - January 2024</h1>
     <h2 id="toc-title">Contents</h2>
 
   <ul>
-  <li><a href="#section" id="toc-section" class="nav-link active" data-scroll-target="#section">20240104</a></li>
-  <li><a href="#section-1" id="toc-section-1" class="nav-link" data-scroll-target="#section-1">20240103</a>
+  <li><a href="#section" id="toc-section" class="nav-link active" data-scroll-target="#section">20240105</a>
   <ul>
   <li><a href="#ceabigr-github-repo" id="toc-ceabigr-github-repo" class="nav-link" data-scroll-target="#ceabigr-github-repo">CEABIGR (GitHub repo)</a></li>
   </ul></li>
-  <li><a href="#section-2" id="toc-section-2" class="nav-link" data-scroll-target="#section-2">20240102</a></li>
+  <li><a href="#section-1" id="toc-section-1" class="nav-link" data-scroll-target="#section-1">20240104</a></li>
+  <li><a href="#section-2" id="toc-section-2" class="nav-link" data-scroll-target="#section-2">20240103</a>
+  <ul>
+  <li><a href="#ceabigr-github-repo-1" id="toc-ceabigr-github-repo-1" class="nav-link" data-scroll-target="#ceabigr-github-repo-1">CEABIGR (GitHub repo)</a></li>
+  </ul></li>
+  <li><a href="#section-3" id="toc-section-3" class="nav-link" data-scroll-target="#section-3">20240102</a></li>
   </ul>
 </nav>
 </nav>
@@ -220,25 +224,37 @@ <h2 id="toc-title">Contents</h2>
 
 
 <section id="section" class="level2">
-<h2 class="anchored" data-anchor-id="section">20240104</h2>
+<h2 class="anchored" data-anchor-id="section">20240105</h2>
+<ul>
+<li>Science Hour</li>
+</ul>
+<section id="ceabigr-github-repo" class="level3">
+<h3 class="anchored" data-anchor-id="ceabigr-github-repo"><a href="https://github.com/sr320/ceabigr">CEABIGR</a> (GitHub repo)</h3>
+<ul>
+<li>Started to look into where (if?) we have methylation data on a per gene basis to plot vs.&nbsp;exon fold-change data from <a href="#">20240103</a></li>
+</ul>
+</section>
+</section>
+<section id="section-1" class="level2">
+<h2 class="anchored" data-anchor-id="section-1">20240104</h2>
 <ul>
 <li><p>Disabled Sensaphone input #3 due to frequent calls. This is the sensor for the “middle” -80<sup>o</sup>C freezer. This is an older freezer from a former professor, so I’m not sure we have any info on how to set it up, but I will see if I can figure out how to change the freezer temp limits, instead of disabling the Sensaphone.</p></li>
 <li><p>Investigated <a href="">a budget spending discrepancy issue</a> (GitHub Issue).</p></li>
 <li><p>Added a <a href="https://github.com/RobertsLab/tusk/blob/main/modules/05-computers.qmd">page about RStudio Server access on Raven</a> on the <a href="https://robertslab.github.io/tusk/">tusk</a> website, per <a href="https://github.com/RobertsLab/resources/issues/1776">this GitHub Issue.</a></p></li>
 </ul>
 </section>
-<section id="section-1" class="level2">
-<h2 class="anchored" data-anchor-id="section-1">20240103</h2>
-<section id="ceabigr-github-repo" class="level3">
-<h3 class="anchored" data-anchor-id="ceabigr-github-repo"><a href="https://github.com/sr320/ceabigr">CEABIGR</a> (GitHub repo)</h3>
+<section id="section-2" class="level2">
+<h2 class="anchored" data-anchor-id="section-2">20240103</h2>
+<section id="ceabigr-github-repo-1" class="level3">
+<h3 class="anchored" data-anchor-id="ceabigr-github-repo-1"><a href="https://github.com/sr320/ceabigr">CEABIGR</a> (GitHub repo)</h3>
 <ul>
 <li><p>Worked extensively on <a href="https://github.com/sr320/ceabigr/blob/main/code/65-exon-coverage.qmd">calculating mean, natural log fold change of Exons 2 - 6, relative to Exon 1 expression across all genes, in all samples</a>.</p></li>
 <li><p>Generated line plots of the various possible comparisons.</p></li>
 </ul>
 </section>
 </section>
-<section id="section-2" class="level2">
-<h2 class="anchored" data-anchor-id="section-2">20240102</h2>
+<section id="section-3" class="level2">
+<h2 class="anchored" data-anchor-id="section-3">20240102</h2>
 
 
 </section>

diff --git a/docs/search.json b/docs/search.json
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
@@ -4814,7 +4814,7 @@
   </url>
   <url>
     <loc>https://robertslab.github.io/sams-notebook/posts/2024/2024-01-02-Daily-Bits---January-2024/index.html</loc>
-    <lastmod>2024-01-05T00:47:54.373Z</lastmod>
+    <lastmod>2024-01-08T17:09:46.789Z</lastmod>
   </url>
   <url>
     <loc>https://robertslab.github.io/sams-notebook/posts/2010/2010-07-03-restriction-digests-various-gigas-gdnas-of-macs/index.html</loc>

diff --git a/posts/2024/2024-01-02-Daily-Bits---January-2024/index.qmd b/posts/2024/2024-01-02-Daily-Bits---January-2024/index.qmd
@@ -12,6 +12,14 @@ categories:
   - Daily Bits
 ---
 
+## 20240105
+
+- Science Hour
+
+### [CEABIGR](https://github.com/sr320/ceabigr) (GitHub repo)
+
+- Started to look into where (if?) we have methylation data on a per gene basis to plot vs. exon fold-change data from [20240103](#)
+
 ## 20240104
 
 - Disabled Sensaphone input #3 due to frequent calls. This is the sensor for the "middle" -80<sup>o</sup>C freezer. This is an older freezer from a former professor, so I'm not sure we have any info on how to set it up, but I will see if I can figure out how to change the freezer temp limits, instead of disabling the Sensaphone.