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update eklipse (nf-core#4894)
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uådate output prefix
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ramprasadn authored and jennylsmith committed Mar 20, 2024
1 parent b0ce1ee commit cd3c9d5
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Showing 2 changed files with 8 additions and 8 deletions.
8 changes: 4 additions & 4 deletions modules/nf-core/eklipse/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -33,8 +33,8 @@ process EKLIPSE {
-in infile.txt \\
$args \\
-ref $ref_gb
mv eKLIPse_*/eKLIPse_deletions.csv eKLIPse_deletions.csv
mv eKLIPse_*/eKLIPse_genes.csv eKLIPse_genes.csv
mv eKLIPse_*/eKLIPse_deletions.csv eKLIPse_${prefix}_deletions.csv
mv eKLIPse_*/eKLIPse_genes.csv eKLIPse_${prefix}_genes.csv
mv eKLIPse_*/eKLIPse_${prefix}.png eKLIPse_${prefix}.png
cat <<-END_VERSIONS > versions.yml
Expand All @@ -47,8 +47,8 @@ process EKLIPSE {
def prefix = task.ext.prefix ?: "${meta.id}"
def VERSION = "1.8"
"""
touch eKLIPse_deletions.csv
touch eKLIPse_genes.csv
touch eKLIPse_${prefix}_deletions.csv
touch eKLIPse_${prefix}_genes.csv
touch eKLIPse_${prefix}.png
cat <<-END_VERSIONS > versions.yml
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8 changes: 4 additions & 4 deletions modules/nf-core/eklipse/tests/main.nf.test.snap

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