v0.1.0

What's Changed

• Updates from base template by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/10
• Replace refs to flake8 -> ruff by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/11
• Turn off uploads to codecov.io until repo is public by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/12
• Simple plotly dash example by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/9
• Bump ruff from 0.0.263 to 0.0.270 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/14
• Django setup by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/8
• Bump tox from 4.5.1 to 4.6.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/16
• Bump httpx from 0.24.0 to 0.24.1 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/6
• Bump pytest-cov from 4.0.0 to 4.1.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/17
• Bump sphinx-rtd-theme from 1.2.0 to 1.2.2 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/18
• Change dependabot sched from weekly -> monthly by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/19
• Bump ruff from 0.0.270 to 0.0.272 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/20
• Bump nbsphinx from 0.9.1 to 0.9.2 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/21
• Bump django from 4.2.1 to 4.2.2 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/22
• File upload - beta version by @vkluzner in https://github.com/ssec-jhu/biospecdb/pull/23
• Improved model by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/24
• Bump tox from 4.6.0 to 4.6.3 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/34
• Bump ruff from 0.0.272 to 0.0.275 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/33
• Bump pytest from 7.3.1 to 7.4.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/32
• Bump django from 4.2.2 to 4.2.3 in /requirements by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/35
• Remove QC fields from data model by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/36
• Bulk upload to models by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/29
• Use SQL explorer for raw SQL querying dashboard by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/41
• Fix schema exclusions by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/50
• Fix silly typo when calling super by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/51
• Nuke some fields from the model by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/53
• 42 Validate Symptom disease value can be cast to expected disease value type by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/54
• 52 Make Disease.name and Disease.alias unique by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/55
• Bump django from 4.2.3 to 4.2.4 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/58
• Add mock_data pytest fixture that loads our mocked django fixture data test_data.json by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/49
• Fix days symptomatic bug in loaddata by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/62
• Bump tox from 4.6.3 to 4.6.4 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/59
• Bump uvicorn[standard] from 0.22.0 to 0.23.2 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/57
• Bump ruff from 0.0.275 to 0.0.286 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/67
• Add db views by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/56
• Adding some basic framework for QC validation plugins. by @amitschang in https://github.com/ssec-jhu/biospecdb/pull/25
• Refactor get_file_info to biospecdb.utils by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/68
• Django data migration for #56 by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/70
• Bump nbsphinx from 0.9.2 to 0.9.3 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/74
• Add update_sql_views management command by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/79
• Implement QC validators and annotators by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/69
• Improve admin forms by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/80
• Give app verbose name by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/87
• Test update_sql_views management command by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/88
• Allow QCAnnotator.value_type to be editable from admin page by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/89
• Bump pandas from 2.0.3 to 2.1.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/76
• Bump build from 0.10.0 to 1.0.3 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/90
• Bump ruff from 0.0.286 to 0.0.288 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/92
• Bump tox from 4.6.4 to 4.11.3 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/91
• Data Input Form by @vkluzner in https://github.com/ssec-jhu/biospecdb/pull/64
• Redirect root url to home by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/94
• Editable patient ID by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/96
• Add plots to sql-explorer results pages by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/85
• Zip spectraldata files with data downloads from sql-explorer by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/78
• Form validation must also include full model validations and not just model field validations. by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/95
• Use forms.NullBooleanField instead of forms.BooleanField by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/99
• Index as UUID and validate bulk upload indexes match by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/102
• Dynamic instrument addition by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/103
• Annotate in save and not clean by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/107
• Add 'Unspecified' gender by @vkluzner in https://github.com/ssec-jhu/biospecdb/pull/105
• Run CI testing using tox by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/111
• Update README with custom management commands and deployment settings by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/112
• Register custom pytest markers by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/110
• Add datedmodel base by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/84
• List qcannotation updated time by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/113
• Save bulk uploaded data in save and not clean by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/108
• Use ModelChoicesField for instrument in form by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/106
• Add io mod by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/114
• Restrict data upload to 'staff' status by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/118
• Add specific data (only) admin site by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/119
• Add basic user permission groups by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/120
• Add custom user app by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/121
• Fix versioning and codecov by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/125
• Create mulitple databases by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/124
• Update codecov badge for README by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/126
• Increase coverage of biosepcdb.util * uploader.charts by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/127
• Disable codecov upload for dependabot PRs by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/133
• Bump django from 4.2.4 to 4.2.5 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/132
• Bump httpx from 0.24.1 to 0.25.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/131
• Bump sphinx-automodapi from 0.15.0 to 0.16.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/130
• git rm biospecdb/apps/uploader/fixtures/user_groups.json by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/134
• Bump plotly from 5.16.1 to 5.17.0 by @dependabot in https://github.com/ssec-jhu/biospecdb/pull/129
• Disable codecov inline PR annotations by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/135
• Auto populate data input form by @vkluzner in https://github.com/ssec-jhu/biospecdb/pull/122
• Add center model by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/116
• Add dev DB rebuild scripts by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/136
• Fix indent from #116 by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/140
• Correct spectraldata filename by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/139
• Nuke all uploaded files from scripts/dev/rebuild_db.sh by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/142
• Rename UploadedFile verbose name -> 'Bulk Data Upload' by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/143
• Update CI badges by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/145
• Install requirements/docs.txt from .readthedocs.yml by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/144
• Update doc build by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/146
• Update README docs badge by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/147
• Post review changes to #138 by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/148
• Add previous visit finding functionality by @vkluzner in https://github.com/ssec-jhu/biospecdb/pull/138
• Update .gitignore by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/149
• Update docker build by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/150
• Use dynamic package versioning when building docs by @jamienoss in https://github.com/ssec-jhu/biospecdb/pull/153

New Contributors

• @dependabot made their first contribution in https://github.com/ssec-jhu/biospecdb/pull/14
• @vkluzner made their first contribution in https://github.com/ssec-jhu/biospecdb/pull/23
• @amitschang made their first contribution in https://github.com/ssec-jhu/biospecdb/pull/25

Full Changelog: https://github.com/ssec-jhu/biospecdb/commits/v0.1.0