12 2017 Notes
- Enrichment graphics
- Use enhanced graphics with circos plots
- Need circos plots to have transparent or empty center
- Want at least two different approaches to choosing "top" terms
- Top 6
- Non-redundant top 6
- Start with the most significant term
- Go to next most significant term
- Calculate the Jaccard of all currently selected terms (based on gene overlap)
- If it is not too similar, add it to selection, go to ii.
- Manual choice
- Changes to enhancedGraphics
- Need to support Brewer palette
- Enrichment table
- Checkboxes to filter by category
- Color well
- Draw pie charts
- Color choices
- Automatic -- choose color brewer palette for up to 8 terms
- Any more than 8, go to "custom"
- Any direct color changes, go to "custom"
- Would be useful to think about allowing users to have multiple enrichments/network
- Add support for abundance-corrected enrichment
- Add legend