Added seed argument to perf_splsda and run_splsda

Plant-Food-Research-Open · Jul 24, 2024 · 8563a8a · 8563a8a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -17,7 +17,7 @@ BugReports: https://github.com/Plant-Food-Research-Open/moiraine/issues
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Imports: 
     Biobase,
     circlize,

diff --git a/NEWS.md b/NEWS.md
@@ -7,3 +7,5 @@
 - `where()` function now imported from tidyselect instead of dplyr (as it required a newer version of dplyr).
 
 - Fixed typo in samples metadata file, samples with no value for "rnaseq_batch" variable now have `NA` rather than `"BNA"` values. 
+
+- `perf_splsda()` and `run_splsda()` now have a `seed` argument (hopefully self-explanatory :)). Accordingly, `feature_preselection_splsda_factory` now has arguments `seed_perf` and `seed_run` to pass on seeds to `perf_splsda()` and `run_splsda`. 
diff --git a/R/prefiltering.R b/R/prefiltering.R
diff --git a/man/dot-clean_seed.Rd b/man/dot-clean_seed.Rd
diff --git a/man/feature_preselection_splsda_factory.Rd b/man/feature_preselection_splsda_factory.Rd
diff --git a/man/perf_splsda.Rd b/man/perf_splsda.Rd
diff --git a/man/plot_feature_preselection_splsda.Rd b/man/plot_feature_preselection_splsda.Rd
diff --git a/man/run_splsda.Rd b/man/run_splsda.Rd