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Now using nf-test for pipeline level testing #183

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Now using nf-test for pipeline level testing

Now using nf-test for pipeline level testing #183

Triggered via pull request October 10, 2024 06:05
@GallVpGallVp
opened #154
tests/pipeline
Status Failure
Total duration 9m 12s
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ci.yml

on: pull_request
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Matrix: test
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33 errors and 1 warning
modules/gallvp/plotsr/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/plotsr/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/syri/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/syri/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/gallvp/fastq_bwa_mem_samblaster/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/gallvp/fastq_bwa_mem_samblaster/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrharvest/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrharvest/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrfinder/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrfinder/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/seqkit/rmdup/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/seqkit/rmdup/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/samblaster/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/samblaster/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrretriever/lai/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrretriever/lai/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/fasta_explore_search_plot_tidk/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/fasta_explore_search_plot_tidk/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrretriever/ltrretriever/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/ltrretriever/ltrretriever/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/bwa/mem/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/gallvp/bwa/mem/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/minimap2/align/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/minimap2/align/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
tests/stub/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
tests/stub/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
tests/stub/main.nf.test docker NF-24.04.2
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