test

.github/workflows/non-omv.yml

@@ -0,0 +1,43 @@
+
+name: Non OMV based tests
+
+on:
+  push:
+    branches: [ master, development, experimental ]
+  pull_request:
+    branches: [ master, development, experimental ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [ 3.7, 3.9 ]
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Set up Python  ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version:  ${{ matrix.python-version }}
+
+    - name: Install OMV
+      run: |
+        pip install git+https://github.com/OpenSourceBrain/osb-model-validation
+        pip install scipy sympy matplotlib cython pandas tables
+
+
+    - name: Test one example
+      run: |
+        pip install pyelectro pyNeuroML
+        cd NeuroML2
+        python GenerateNeuroMLlite.py # test one example...
+
+
+    - name: OMV final version info
+      run: |
+        omv list -V # list installed engines
+        env

.github/workflows/omv-ci.yml

@@ -0,0 +1,41 @@
+
+name: Continuous build using OMV
+
+on:
+  push:
+    branches: [ master, development, experimental ]
+  pull_request:
+    branches: [ master, development, experimental ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [ 3.7, 3.9 ]
+        engine: [ jNeuroML, jNeuroML_NEURON, Brian2 ]
+
+    steps:
+    - uses: actions/checkout@v2
+
+    - name: Set up Python  ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version:  ${{ matrix.python-version }}
+
+    - name: Install OMV
+      run: |
+        pip install git+https://github.com/OpenSourceBrain/osb-model-validation
+        pip install scipy sympy matplotlib cython pandas tables
+        pip install pyelectro pyNeuroML
+
+    - name: Run OMV tests on engine ${{ matrix.engine }}
+      run: |
+        omv all -V --engine=${{ matrix.engine }}
+
+    - name: OMV final version info
+      run: |
+        omv list -V # list installed engines
+        env

.gitignore

@@ -46,3 +46,4 @@ Matlab/*.png
 /NeuroML2/temp
 /NeuroML2/SimMejiasFig2_0.json
 /NeuroML2/MejiasFig2.json
+arm64

.travis.yml

@@ -3,30 +3,30 @@ sudo: false
 addons:
    apt:
      packages:
-        - python-numpy 
-        - python-scipy 
-        - python-matplotlib 
+        - python-numpy
+        - python-scipy
+        - python-matplotlib
         - python-sympy
         - python-tk
-        - python-tables 
+        - python-tables
         - python-tornado
-    
+
 
 language: python
-python: 2.7
+python:
+  - 2.7
+  - 3.8
+
 
-
-virtualenv:
-   system_site_packages: true
 
 env:
     - OMV_ENGINE=jNeuroML
     - OMV_ENGINE=jNeuroML_NEURON
-    - OMV_ENGINE=Brian     # Python script runs with Brian; should be just Python, but Brian engine is quick to set up...
+    - OMV_ENGINE=Brian2     # Python script runs with Brian; should be just Python, but Brian engine is quick to set up...
 
-install: 
+install:
     - pip install git+https://github.com/OpenSourceBrain/osb-model-validation
-    
+
     # install pyelectro
     - pip install git+https://github.com/NeuralEnsemble/pyelectro.git
 
@@ -40,9 +40,4 @@ install:
 
 script:
     - omv all -V
-    - omv list -V 
-
-
-
-
-
+    - omv list -V

NeuroML2/.test.gennmllite.omt

@@ -1,5 +1,4 @@
 # Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
-
-target: GenerateNeuroMLlite.py
-engine: Brian
 
+target: GenerateNeuroMLlite.py
+engine: Brian2