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import semantic_version | ||
import toml | ||
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def read_version(): | ||
with open("pyproject.toml", "r") as file: | ||
pyproject = toml.load(file) | ||
return semantic_version.Version(pyproject["tool"]["poetry"]["version"]) | ||
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def write_version(version): | ||
with open("pyproject.toml", "r") as file: | ||
pyproject = toml.load(file) | ||
pyproject["tool"]["poetry"]["version"] = str(version) | ||
with open("pyproject.toml", "w") as file: | ||
toml.dump(pyproject, file) | ||
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def bump_version(part): | ||
version = read_version() | ||
if part == "major": | ||
new_version = version.next_major() | ||
elif part == "minor": | ||
new_version = version.next_minor() | ||
elif part == "patch": | ||
new_version = version.next_patch() | ||
else: | ||
raise ValueError("Invalid part: choose 'major', 'minor', or 'patch'") | ||
write_version(new_version) | ||
print(f"Updated version to {new_version}") | ||
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if __name__ == "__main__": | ||
import sys | ||
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if len(sys.argv) < 2 or sys.argv[1] not in ["read", "major", "minor", "patch"]: | ||
raise ValueError("Missing command: choose 'read', 'major', 'minor', or 'patch") | ||
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command = sys.argv[1] | ||
if command == "read": | ||
current_version = read_version() | ||
print(f"Current version is {current_version}") | ||
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else: | ||
bump_version(command) |
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# https://python-poetry.org/docs/pyproject | ||
# minimal required information | ||
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[project] | ||
name = "osipi" | ||
version = "0.1.2" | ||
dependencies = [ | ||
"numpy", | ||
"scipy" | ||
] | ||
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# optional information | ||
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dependencies = [ "numpy", "scipy",] | ||
description = "The authorative python package for perfusion MRI" | ||
readme = "README.md" | ||
authors = [ | ||
{ name = "Luis Torres", email = "[email protected]" }, | ||
{ name = "Steven Sourbron", email = "[email protected]" }, | ||
] | ||
license = { file = "LICENSE" } | ||
classifiers = [ | ||
# How mature is this project? Common values are | ||
# 3 - Alpha | ||
# 4 - Beta | ||
# 5 - Production/Stable | ||
'Development Status :: 3 - Alpha', | ||
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# Indicate who your project is intended for | ||
'Intended Audience :: Developers', | ||
'Intended Audience :: Science/Research', | ||
'Topic :: Scientific/Engineering', | ||
'Operating System :: OS Independent', | ||
classifiers = [ "Development Status :: 3 - Alpha", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "Topic :: Scientific/Engineering", "Operating System :: OS Independent", "License :: OSI Approved :: Apache Software License", "Programming Language :: Python", "Programming Language :: Python :: 3",] | ||
keywords = [ "python", "medical imaging", "perfusion", "MRI",] | ||
requires-python = ">=3.6" | ||
[[project.authors]] | ||
name = "Luis Torres" | ||
email = "[email protected]" | ||
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'License :: OSI Approved :: Apache Software License', | ||
"Programming Language :: Python", | ||
"Programming Language :: Python :: 3" | ||
] | ||
keywords = ['python', "medical imaging", "perfusion", "MRI"] | ||
[[project.authors]] | ||
name = "Steven Sourbron" | ||
email = "[email protected]" | ||
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requires-python = ">=3.6" | ||
[project.license] | ||
file = "LICENSE" | ||
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[project.urls] | ||
"Homepage" = "https://osipi.github.io/pypi" | ||
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[tool.setuptools.packages.find] | ||
where = ["src"] | ||
Homepage = "https://osipi.github.io/pypi" | ||
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[project.optional-dependencies] | ||
tests = [ | ||
"pytest", | ||
"matplotlib", | ||
] | ||
docs = [ | ||
"sphinx", | ||
"pydata-sphinx-theme", | ||
"myst-parser", | ||
"sphinx-copybutton", | ||
"sphinx-design", | ||
"sphinx-remove-toctrees", | ||
"autodocsumm", | ||
"docutils", | ||
"sphinxcontrib-applehelp", | ||
"sphinxcontrib-devhelp", | ||
"sphinxcontrib-htmlhelp", | ||
"sphinxcontrib-jsmath", | ||
"sphinxcontrib-qthelp", | ||
"sphinxcontrib-serializinghtml", | ||
"sphinx-gallery", | ||
] | ||
tests = [ "pytest", "matplotlib",] | ||
docs = [ "sphinx", "pydata-sphinx-theme", "myst-parser", "sphinx-copybutton", "sphinx-design", "sphinx-remove-toctrees", "autodocsumm", "docutils", "sphinxcontrib-applehelp", "sphinxcontrib-devhelp", "sphinxcontrib-htmlhelp", "sphinxcontrib-jsmath", "sphinxcontrib-qthelp", "sphinxcontrib-serializinghtml", "sphinx-gallery",] | ||
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[tool.ruff] | ||
# Exclude a variety of commonly ignored directories. | ||
exclude = [ | ||
".direnv", ".eggs", ".git", ".git-rewrite","__init__.py", | ||
".mypy_cache", ".nox", ".pants.d", ".pyenv", ".pytest_cache", ".pytype", | ||
".ruff_cache", ".svn", ".venv", ".vscode", "__pypackages__", "_build", | ||
"buck-out", "build", "dist", "site-packages", "venv", | ||
] | ||
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exclude = [ ".direnv", ".eggs", ".git", ".git-rewrite", "__init__.py", ".mypy_cache", ".nox", ".pants.d", ".pyenv", ".pytest_cache", ".pytype", ".ruff_cache", ".svn", ".venv", ".vscode", "__pypackages__", "_build", "buck-out", "build", "dist", "site-packages", "venv",] | ||
line-length = 100 | ||
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[tool.poetry] | ||
name = "osipi" | ||
version = "0.1.2" | ||
description = "The authorative python package for perfusion MRI" | ||
authors = [ "Luis Torres <[email protected]>", "Steven Sourbron <[email protected]>",] | ||
readme = "README.md" | ||
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[tool.ruff.lint] | ||
# Enable Pyflakes (`F`), a subset of the pycodestyle (`E`) codes, and isort (`I`). | ||
select = ["E4", "E7", "E9", "F", "I"] | ||
select = [ "E4", "E7", "E9", "F", "I",] | ||
ignore = [] | ||
fixable = ["ALL"] | ||
fixable = [ "ALL",] | ||
unfixable = [] | ||
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[tool.ruff.format] | ||
# Like Black, use double quotes for strings. | ||
quote-style = "double" | ||
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indent-style = "space" | ||
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skip-magic-trailing-comma = false | ||
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line-ending = "auto" | ||
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docstring-code-format = false | ||
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docstring-code-line-length = "dynamic" | ||
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[tool.poetry] | ||
name = "osipi" | ||
version = "0.1.2" | ||
description = "The authorative python package for perfusion MRI" | ||
authors = ["Luis Torres <[email protected]>", "Steven Sourbron <[email protected]>"] | ||
readme = "README.md" | ||
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[tool.poetry.dependencies] | ||
python = "^3.9" | ||
numpy = "^1.21.2" | ||
scipy = "^1.7.3" | ||
matplotlib = "3.9.0" | ||
requests = "^2.32.3" | ||
semantic-version = "^2.10.0" | ||
toml = "^0.10.2" | ||
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[tool.setuptools.packages.find] | ||
where = [ "src",] | ||
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[tool.poetry.group.dev.dependencies] | ||
flake8 = "^7.0.0" | ||
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@@ -125,8 +72,17 @@ pytest-cov = "^5.0.0" | |
autodocsumm = "^0.2.12" | ||
docutils = "^0.21.2" | ||
myst-parser = "^3.0.1" | ||
rstcheck = {extras = ["sphinx"], version = "^6.2.1"} | ||
mkdocs = "^1.6.0" | ||
mkdocs-material = {extras = ["imaging"], version = "^9.5.27"} | ||
mkdocs-gallery = "^0.10.1" | ||
mkdocstrings = {extras = ["crystal", "python"], version = "^0.25.1"} | ||
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[tool.poetry.group.docs.dependencies.rstcheck] | ||
extras = [ "sphinx",] | ||
version = "^6.2.1" | ||
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[tool.poetry.group.docs.dependencies.mkdocs-material] | ||
extras = [ "imaging",] | ||
version = "^9.5.27" | ||
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[tool.poetry.group.docs.dependencies.mkdocstrings] | ||
extras = [ "crystal", "python",] | ||
version = "^0.25.1" |