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Updates for 2024 edition course #2

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Apr 26, 2024
Merged

Updates for 2024 edition course #2

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eb35bea
new case studies and logo
andrew-bean Apr 26, 2024
b39c7fe
lower cmdstan version
andrew-bean Apr 26, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/build-book.yaml
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Expand Up @@ -33,7 +33,7 @@ jobs:
shell: Rscript {0}
run: |
cmdstanr::check_cmdstan_toolchain(fix = TRUE)
cmdstanr::install_cmdstan()
cmdstanr::install_cmdstan(version = "2.32.2")
- uses: quarto-dev/quarto-actions/setup@v2

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4 changes: 3 additions & 1 deletion _quarto-public.yml
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@@ -1,6 +1,5 @@
project:
output-dir: docs/public
post-render: src/move_videos.R # workaround for Quarto issue https://github.com/quarto-dev/quarto-cli/issues/3892

book:
repo-url: https://github.com/Novartis/bamdd/
Expand All @@ -11,12 +10,15 @@ book:
chapters:
- src/01a_introduction.qmd
- src/01b_basic_workflow.qmd
- src/01c_priors.qmd
- part: src/02_case_studies.qmd
chapters:
- src/02a_meta_analysis.qmd
- src/02ab_meta_analysis_trtdiff.qmd
- src/02ac_meta_analysis_strata.qmd
- src/02b_dose_finding.qmd
- src/02c_dose_escalation.qmd
- src/02cb_tte_dose_escalation.qmd
- src/02e_multiple_imputation.qmd
- src/02g_longitudinal.qmd
- src/02h_mmrm.qmd
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4 changes: 3 additions & 1 deletion _quarto.yml
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Expand Up @@ -13,7 +13,7 @@ execute:
freeze: false

book:
title: "(Bayesian) Applied Modelling in Drug Development (BAMDD)"
title: "Applied Modelling in Drug Development"
subtitle: "Flexible regression modelling in Stan via `brms`"
repo-actions: [issue]
repo-branch: master
Expand All @@ -25,6 +25,8 @@ book:
- Lukas Widmer - <[email protected]>
- Andrew Bean - <[email protected]>
date: today
sidebar:
logo: bamdd_logo.png

# we use per chapter references
bibliography:
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4 changes: 4 additions & 0 deletions index.qmd
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Expand Up @@ -34,6 +34,10 @@ appropiate. Key changes to the web-site are tracked here:


::: {.content-visible when-profile="public"}
- 29th April 2024: Third edition course from Paul Bürkner with the new
case studies on probability of success, meta-analytic priors with
covariates & time-to-event modelling in Oncology phase I
dose-escalation. Pre-read version.
- 19th April 2024: First public version at [opensource.nibr.com/bamdd](http://opensource.nibr.com/bamdd)
- 5th January 2024: Release web-site in more modern quarto book
based format
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